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1QHB
Asym. Unit
Info
Asym.Unit (599 KB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
VANADIUM BROMOPEROXIDASE FROM RED ALGA CORALLINA OFFICINALIS
Authors
:
M. N. Isupov, A. R. Dalby, A. A. Brindley, J. A. Littlechild
Date
:
11 May 99 (Deposition) - 05 Jul 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (2x)
Keywords
:
Red Alga, Halogenation, Vanadium-Dependent, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. N. Isupov, A. R. Dalby, A. A. Brindley, Y. Izumi, T. Tanabe, G. N. Murshudov, J. A. Littlechild
Crystal Structure Of Dodecameric Vanadium-Dependent Bromoperoxidase From The Red Algae Corallina Officinalis.
J. Mol. Biol. V. 299 1035 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: CAA (AUTHOR)
14: CAB (AUTHOR)
15: CAC (AUTHOR)
16: CAD (AUTHOR)
17: CAE (AUTHOR)
18: CAF (AUTHOR)
19: VAA (AUTHOR)
20: VAB (AUTHOR)
21: VAC (AUTHOR)
22: VAD (AUTHOR)
23: VAE (AUTHOR)
24: VAF (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:398 , ARG A:406 , PRO A:476 , HIS A:478 , SER A:483 , GLY A:484 , HIS A:485 , ARG A:545 , HIS A:551
BINDING SITE FOR RESIDUE PO4 A 3000
02
AC2
SOFTWARE
PHE A:359 , GLN A:361 , ASP A:363 , ASP A:366 , GLN A:368
BINDING SITE FOR RESIDUE CA A 3001
03
AC3
SOFTWARE
LYS B:398 , ARG B:406 , PRO B:476 , HIS B:478 , SER B:483 , GLY B:484 , HIS B:485 , ARG B:545 , HIS B:551
BINDING SITE FOR RESIDUE PO4 B 3002
04
AC4
SOFTWARE
PHE B:359 , GLN B:361 , ASP B:363 , ASP B:366 , GLN B:368
BINDING SITE FOR RESIDUE CA B 3003
05
AC5
SOFTWARE
LYS C:398 , ARG C:406 , PRO C:476 , HIS C:478 , SER C:483 , GLY C:484 , HIS C:485 , ARG C:545 , HIS C:551
BINDING SITE FOR RESIDUE PO4 C 3004
06
AC6
SOFTWARE
PHE C:359 , GLN C:361 , ASP C:363 , ASP C:366 , GLN C:368
BINDING SITE FOR RESIDUE CA C 3005
07
AC7
SOFTWARE
LYS D:398 , ARG D:406 , PRO D:476 , HIS D:478 , SER D:483 , GLY D:484 , HIS D:485 , ARG D:545 , HIS D:551 , HOH D:3267
BINDING SITE FOR RESIDUE PO4 D 3006
08
AC8
SOFTWARE
PHE D:359 , GLN D:361 , ASP D:363 , ASP D:366 , GLN D:368
BINDING SITE FOR RESIDUE CA D 3007
09
AC9
SOFTWARE
LYS E:398 , ARG E:406 , PRO E:476 , HIS E:478 , SER E:483 , GLY E:484 , HIS E:485 , ARG E:545 , HIS E:551 , HOH E:3334
BINDING SITE FOR RESIDUE PO4 E 3008
10
BC1
SOFTWARE
PHE E:359 , GLN E:361 , ASP E:363 , ASP E:366 , GLN E:368
BINDING SITE FOR RESIDUE CA E 3009
11
BC2
SOFTWARE
LYS F:398 , ARG F:406 , PRO F:476 , HIS F:478 , SER F:483 , GLY F:484 , HIS F:485 , ARG F:545 , HIS F:551
BINDING SITE FOR RESIDUE PO4 F 3010
12
BC3
SOFTWARE
PHE F:359 , GLN F:361 , ASP F:363 , ASP F:366 , GLN F:368
BINDING SITE FOR RESIDUE CA F 3011
13
CAA
AUTHOR
PHE A:359 , GLN A:361 , ASP A:363 , ASP A:366
CALCIUM BINDING SITE IN SUBUNIT A
14
CAB
AUTHOR
PHE E:359 , GLN E:361 , ASP E:363 , ASP E:366
CALCIUM BINDING SITE IN SUBUNIT B
15
CAC
AUTHOR
PHE E:359 , GLN E:361 , ASP E:363 , ASP E:366
CALCIUM BINDING SITE IN SUBUNIT C
16
CAD
AUTHOR
PHE D:359 , GLN D:361 , ASP D:363 , ASP D:366
CALCIUM BINDING SITE IN SUBUNIT D
17
CAE
AUTHOR
PHE E:359 , GLN E:361 , ASP E:363 , ASP E:366
CALCIUM BINDING SITE IN SUBUNIT E
18
CAF
AUTHOR
PHE F:359 , GLN F:361 , ASP F:363 , ASP F:366
CALCIUM BINDING SITE IN SUBUNIT F
19
VAA
AUTHOR
LYS A:398 , ARG A:406 , SER A:483 , GLY A:484 , HIS A:485 , ARG A:545 , HIS A:551
VANADATE BINDING SITE IN SUBUNIT A
20
VAB
AUTHOR
LYS E:398 , ARG E:406 , SER E:483 , GLY E:484 , HIS E:485 , ARG E:545 , HIS E:551
VANADATE BINDING SITE IN SUBUNIT B
21
VAC
AUTHOR
LYS E:398 , ARG E:406 , SER E:483 , GLY E:484 , HIS E:485 , ARG E:545 , HIS E:551
VANADATE BINDING SITE IN SUBUNIT C
22
VAD
AUTHOR
LYS D:398 , ARG D:406 , SER D:483 , GLY D:484 , HIS D:485 , ARG D:545 , HIS D:551
VANADATE BINDING SITE IN SUBUNIT D
23
VAE
AUTHOR
LYS E:398 , ARG E:406 , SER E:483 , GLY E:484 , HIS E:485 , ARG E:545 , HIS E:551
VANADATE BINDING SITE IN SUBUNIT E
24
VAF
AUTHOR
LYS F:398 , ARG F:406 , SER F:483 , GLY F:484 , HIS F:485 , ARG F:545 , HIS F:551
VANADATE BINDING SITE IN SUBUNIT F
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1qhba_ (A:)
1b: SCOP_d1qhbb_ (B:)
1c: SCOP_d1qhbc_ (C:)
1d: SCOP_d1qhbd_ (D:)
1e: SCOP_d1qhbe_ (E:)
1f: SCOP_d1qhbf_ (F:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Acid phosphatase/Vanadium-dependent haloperoxidase
(16)
Superfamily
:
Acid phosphatase/Vanadium-dependent haloperoxidase
(16)
Family
:
Haloperoxidase (bromoperoxidase)
(3)
Protein domain
:
Haloperoxidase (bromoperoxidase)
(3)
Red algae (Corallina officinalis) [TaxId: 35170]
(1)
1a
d1qhba_
A:
1b
d1qhbb_
B:
1c
d1qhbc_
C:
1d
d1qhbd_
D:
1e
d1qhbe_
E:
1f
d1qhbf_
F:
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1qhbA00 (A:2-596)
1b: CATH_1qhbB00 (B:2-596)
1c: CATH_1qhbC00 (C:2-596)
1d: CATH_1qhbD00 (D:2-596)
1e: CATH_1qhbE00 (E:2-596)
1f: CATH_1qhbF00 (F:2-596)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Vanadium-containing Chloroperoxidase; domain 2
(13)
Homologous Superfamily
:
Vanadium-containing Chloroperoxidase, domain 2
(13)
Corallina officinalis. Organism_taxid: 35170
(1)
1a
1qhbA00
A:2-596
1b
1qhbB00
B:2-596
1c
1qhbC00
C:2-596
1d
1qhbD00
D:2-596
1e
1qhbE00
E:2-596
1f
1qhbF00
F:2-596
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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