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1QH3
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
HUMAN GLYOXALASE II WITH CACODYLATE AND ACETATE IONS PRESENT IN THE ACTIVE SITE
Authors
:
A. D. Cameron, M. Ridderstrom, B. Olin, B. Mannervik
Date
:
10 May 99 (Deposition) - 24 Sep 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Metallo-Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Cameron, M. Ridderstrom, B. Olin, B. Mannervik
Crystal Structure Of Human Glyoxalase Ii And Its Complex With A Glutathione Thiolester Substrate Analogue.
Structure Fold. Des. V. 7 1067 1999
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
2c: CACODYLATE ION (CACc)
2d: CACODYLATE ION (CACd)
3a: CHLORIDE ION (CLa)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CAC
4
Ligand/Ion
CACODYLATE ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
MN
2
Ligand/Ion
MANGANESE (II) ION
5
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: ZNA (AUTHOR)
15: ZNB (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:54 , HIS A:56 , HIS A:110 , ASP A:134 , ZN A:262 , CAC A:463 , HOH A:468
BINDING SITE FOR RESIDUE ZN A 261
02
AC2
SOFTWARE
ASP A:58 , HIS A:59 , ASP A:134 , HIS A:173 , ZN A:261 , CAC A:463 , HOH A:468
BINDING SITE FOR RESIDUE ZN A 262
03
AC3
SOFTWARE
HIS A:56 , ASP A:58 , HIS A:110 , ASP A:134 , TYR A:145 , HIS A:173 , ZN A:261 , ZN A:262 , HOH A:468 , HOH A:506
BINDING SITE FOR RESIDUE CAC A 463
04
AC4
SOFTWARE
PHE A:137 , CYS A:141 , LYS A:143 , TYR A:175 , ARG A:249 , LYS A:252 , HOH A:471 , HOH A:507 , HOH A:521
BINDING SITE FOR RESIDUE ACT A 464
05
AC5
SOFTWARE
CYS A:153 , GLU A:158
BINDING SITE FOR RESIDUE CAC A 265
06
AC6
SOFTWARE
HIS A:185 , HIS A:235 , GLU A:251 , CL A:467
BINDING SITE FOR RESIDUE MN A 266
07
AC7
SOFTWARE
MN A:266 , MN B:266
BINDING SITE FOR RESIDUE CL A 467
08
AC8
SOFTWARE
HIS B:54 , HIS B:56 , HIS B:110 , ASP B:134 , ZN B:262 , CAC B:469 , HOH B:473
BINDING SITE FOR RESIDUE ZN B 261
09
AC9
SOFTWARE
ASP B:58 , HIS B:59 , ASP B:134 , HIS B:173 , ZN B:261 , CAC B:469 , HOH B:473
BINDING SITE FOR RESIDUE ZN B 262
10
BC1
SOFTWARE
HIS B:56 , ASP B:58 , HIS B:110 , ASP B:134 , HIS B:173 , TYR B:175 , ZN B:261 , ZN B:262 , HOH B:473 , HOH B:511 , HOH B:616
BINDING SITE FOR RESIDUE CAC B 469
11
BC2
SOFTWARE
PHE B:137 , CYS B:141 , TYR B:175 , ARG B:249 , LYS B:252 , HOH B:476 , HOH B:512
BINDING SITE FOR RESIDUE ACT B 468
12
BC3
SOFTWARE
CYS B:153 , LYS B:154 , GLU B:158
BINDING SITE FOR RESIDUE CAC B 265
13
BC4
SOFTWARE
CL A:467 , HIS B:185 , GLU B:251 , HOH B:527 , HOH B:554 , HOH B:659
BINDING SITE FOR RESIDUE MN B 266
14
ZNA
AUTHOR
HIS A:54 , HIS A:56 , HIS A:110 , ASP A:134 , CAC A:463 , HOH A:468 , ASP A:58 , HIS A:59 , HIS A:173
BINUCLEAR ZINC BINDING SITE IN A MOLECULE
15
ZNB
AUTHOR
HIS B:54 , HIS B:56 , HIS B:110 , ASP B:134 , CAC B:469 , HOH B:473 , ASP B:58 , HIS B:59 , HIS B:173
BINUCLEAR ZINC BINDING SITE IN B MOLECULE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(8, 16)
Info
All Exons
Exon 1.3 (A:1-35 | B:1-35)
Exon 1.4 (A:36-57 | B:36-57)
Exon 1.5 (A:57-96 | B:57-96)
Exon 1.6 (A:97-133 | B:97-133)
Exon 1.7 (A:133-167 | B:133-167)
Exon 1.8 (A:168-201 | B:168-201)
Exon 1.9 (A:202-228 | B:202-228)
Exon 1.10b (A:228-260 | B:228-260)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9
8: Boundary 1.9/1.10b
9: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000397356
1a
ENSE00001908102
chr16:
1877162-1876713
450
GLO2_HUMAN
1-26
26
0
-
-
1.3
ENST00000397356
3
ENSE00001791655
chr16:
1873038-1872866
173
GLO2_HUMAN
26-83
58
2
A:1-35
B:1-35
35
35
1.4
ENST00000397356
4
ENSE00000945924
chr16:
1872365-1872301
65
GLO2_HUMAN
84-105
22
2
A:36-57
B:36-57
22
22
1.5
ENST00000397356
5
ENSE00000683285
chr16:
1870015-1869898
118
GLO2_HUMAN
105-144
40
2
A:57-96
B:57-96
40
40
1.6
ENST00000397356
6
ENSE00000683283
chr16:
1869224-1869116
109
GLO2_HUMAN
145-181
37
2
A:97-133
B:97-133
37
37
1.7
ENST00000397356
7
ENSE00001670106
chr16:
1867272-1867169
104
GLO2_HUMAN
181-215
35
2
A:133-167
B:133-167
35
35
1.8
ENST00000397356
8
ENSE00001739735
chr16:
1866995-1866894
102
GLO2_HUMAN
216-249
34
2
A:168-201
B:168-201
34
34
1.9
ENST00000397356
9
ENSE00001710138
chr16:
1859834-1859755
80
GLO2_HUMAN
250-276
27
2
A:202-228
B:202-228
27
27
1.10b
ENST00000397356
10b
ENSE00001849129
chr16:
1859383-1859104
280
GLO2_HUMAN
276-308
33
2
A:228-260
B:228-260
33
33
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qh3a_ (A:)
1b: SCOP_d1qh3b_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
Glyoxalase II (hydroxyacylglutathione hydrolase)
(5)
Protein domain
:
Glyoxalase II (hydroxyacylglutathione hydrolase)
(5)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1qh3a_
A:
1b
d1qh3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qh3A00 (A:1-260)
1b: CATH_1qh3B00 (B:1-260)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Metallo-beta-lactamase; Chain A
(92)
Homologous Superfamily
:
Metallo-beta-lactamase, chain A
(92)
Human (Homo sapiens)
(2)
1a
1qh3A00
A:1-260
1b
1qh3B00
B:1-260
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lactamase_B_1qh3B01 (B:7-173)
1b: PFAM_Lactamase_B_1qh3B02 (B:7-173)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Metallo-HOrase
(67)
Family
:
Lactamase_B
(53)
Homo sapiens (Human)
(2)
1a
Lactamase_B-1qh3B01
B:7-173
1b
Lactamase_B-1qh3B02
B:7-173
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