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1QGJ
Biol. Unit 1
Info
Asym.Unit (125 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (62 KB)
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(1)
Title
:
ARABIDOPSIS THALIANA PEROXIDASE N
Authors
:
O. Mirza, L. Oestergaard, K. G. Welinder, A. Henriksen, M. Gajhede
Date
:
29 Apr 99 (Deposition) - 08 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Mirza, A. Henriksen, L. Ostergaard, K. G. Welinder, M. Gajhede
Arabidopsis Thaliana Peroxidase N: Structure Of A Novel Neutral Peroxidase.
Acta Crystallogr. , Sect. D V. 56 372 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GSH
1
Ligand/Ion
GLUTATHIONE
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:2012
BINDING SITE FOR RESIDUE CA A 2001
2
AC2
SOFTWARE
THR A:166 , ASP A:217 , THR A:220 , THR A:223 , ASP A:225
BINDING SITE FOR RESIDUE CA A 2002
3
AC5
SOFTWARE
ARG A:31 , ALA A:34 , SER A:35 , ARG A:38 , PHE A:41 , SER A:70 , ARG A:72 , PRO A:135 , SER A:136 , PRO A:137 , LEU A:161 , SER A:162 , ALA A:164 , HIS A:165 , PHE A:167 , GLY A:168 , GLN A:169 , ALA A:170 , LYS A:171 , SER A:241 , HOH A:2049 , HOH A:2065 , HOH A:2171 , HOH A:2525
BINDING SITE FOR RESIDUE HEM A 1350
4
AC7
SOFTWARE
ASN A:154 , THR A:156 , ASP A:157 , CYS A:275 , ALA A:276 , ARG A:279 , LYS B:27 , ALA B:28 , HOH B:2292
BINDING SITE FOR RESIDUE GSH A 1794
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (A:1-299)
2: PEROXIDASE_2 (A:33-44)
3: PEROXIDASE_1 (A:157-167)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER59_ARATH
29-327
1
A:1-299
-
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER59_ARATH
61-72
1
A:33-44
-
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER59_ARATH
185-195
1
A:157-167
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qgja_ (A:)
1b: SCOP_d1qgjb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Thale cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]
(1)
1a
d1qgja_
A:
1b
d1qgjb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qgjA01 (A:2-134,A:281-299)
1b: CATH_1qgjB01 (B:2-134,B:281-297)
2a: CATH_1qgjA02 (A:135-280)
2b: CATH_1qgjB02 (B:135-280)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Thale cress (Arabidopsis thaliana)
(2)
1a
1qgjA01
A:2-134,A:281-299
1b
1qgjB01
B:2-134,B:281-297
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Thale cress (Arabidopsis thaliana)
(2)
2a
1qgjA02
A:135-280
2b
1qgjB02
B:135-280
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_peroxidase_1qgjB01 (B:18-265)
1b: PFAM_peroxidase_1qgjB02 (B:18-265)
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Clans
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)
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)
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Clan
:
no clan defined [family: peroxidase]
(92)
Family
:
peroxidase
(92)
Arabidopsis thaliana (Mouse-ear cress)
(3)
1a
peroxidase-1qgjB01
B:18-265
1b
peroxidase-1qgjB02
B:18-265
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Asymmetric Unit 1
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Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
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