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1QFX
Biol. Unit 1
Info
Asym.Unit (166 KB)
Biol.Unit 1 (315 KB)
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(1)
Title
:
PH 2.5 ACID PHOSPHATASE FROM ASPERGILLUS NIGER
Authors
:
D. Kostrewa, M. Wyss, A. D'Arcy, A. P. G. M. Van Loon
Date
:
15 Apr 99 (Deposition) - 19 Apr 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Phosphomonoesterase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kostrewa, M. Wyss, A. D'Arcy, A. P. Van Loon
Crystal Structure Of Aspergillus Niger Ph 2. 5 Acid Phosphatase At 2. 4 A Resolution.
J. Mol. Biol. V. 288 965 1999
[
close entry info
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Hetero Components
(5, 66)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
GOL
12
Ligand/Ion
GLYCEROL
3
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:296 , ALA A:297 , THR A:300 , LEU A:432 , TRP A:436 , GOL A:703 , HOH A:928 , HOH A:1110
BINDING SITE FOR RESIDUE NAG A 596
02
AC2
SOFTWARE
ASN A:180 , ASN A:437 , ASN A:439 , HOH A:898 , HOH A:1075 , THR B:441 , NAG B:739
BINDING SITE FOR RESIDUE NAG A 739
03
AC3
SOFTWARE
GLY A:143 , ASN A:172 , ASN A:176 , PRO A:450 , ILE A:451 , NAG A:473 , HOH A:827 , HOH A:967 , HOH A:988 , GOL B:706
BINDING SITE FOR RESIDUE NAG A 472
04
AC4
SOFTWARE
CYS A:109 , ILE A:451 , CYS A:453 , NAG A:472 , BMA A:474 , HOH A:967 , HOH A:1031
BINDING SITE FOR RESIDUE NAG A 473
05
AC5
SOFTWARE
NAG A:473 , MAN A:475 , MAN A:478 , HOH A:963
BINDING SITE FOR RESIDUE BMA A 474
06
AC6
SOFTWARE
BMA A:474 , MAN A:476 , HOH A:1076 , NAG B:596
BINDING SITE FOR RESIDUE MAN A 475
07
AC7
SOFTWARE
MAN A:475 , MAN A:477 , ASN B:412 , NAG B:596
BINDING SITE FOR RESIDUE MAN A 476
08
AC8
SOFTWARE
MAN A:476 , ASN B:412 , LYS B:413 , SO4 B:811
BINDING SITE FOR RESIDUE MAN A 477
09
AC9
SOFTWARE
BMA A:474
BINDING SITE FOR RESIDUE MAN A 478
10
BC1
SOFTWARE
MAN A:475 , MAN A:476 , ASN B:296 , THR B:300 , TYR B:431 , LEU B:432 , TRP B:436 , HOH B:938
BINDING SITE FOR RESIDUE NAG B 596
11
BC2
SOFTWARE
THR A:441 , NAG A:739 , HOH A:1060 , HOH A:1082 , ASN B:180 , ASN B:437 , ASN B:439 , HOH B:908 , HOH B:1102 , HOH B:1127
BINDING SITE FOR RESIDUE NAG B 739
12
BC3
SOFTWARE
TYR B:110 , GLY B:143 , ASN B:172 , ASN B:176 , PRO B:450 , ILE B:451 , NAG B:473 , HOH B:839 , HOH B:976 , HOH B:997 , HOH B:1062
BINDING SITE FOR RESIDUE NAG B 472
13
BC4
SOFTWARE
CYS B:109 , TYR B:110 , ILE B:451 , CYS B:453 , NAG B:472 , BMA B:474 , HOH B:972 , HOH B:976 , HOH B:1039
BINDING SITE FOR RESIDUE NAG B 473
14
BC5
SOFTWARE
CYS B:453 , NAG B:473 , MAN B:475 , MAN B:478 , HOH B:972 , HOH B:1067
BINDING SITE FOR RESIDUE BMA B 474
15
BC6
SOFTWARE
BMA B:474
BINDING SITE FOR RESIDUE MAN B 475
16
BC7
SOFTWARE
BMA B:474
BINDING SITE FOR RESIDUE MAN B 478
17
BC8
SOFTWARE
GLY A:305 , PRO A:306 , LYS A:307 , ARG A:365 , HOH A:870 , HOH A:930 , HOH A:1021
BINDING SITE FOR RESIDUE SO4 A 801
18
BC9
SOFTWARE
ARG A:66 , PRO A:68 , SER A:69 , ALA A:72 , PHE A:246 , HOH A:1106
BINDING SITE FOR RESIDUE SO4 A 802
19
CC1
SOFTWARE
PRO A:334 , ASN A:335 , ASN A:347 , PRO A:348 , HOH A:907 , HOH A:1010 , ASN B:335
BINDING SITE FOR RESIDUE SO4 A 803
20
CC2
SOFTWARE
SER A:69 , PRO A:70 , SER A:71 , HOH A:1121
BINDING SITE FOR RESIDUE SO4 A 804
21
CC3
SOFTWARE
PRO A:48 , GLU A:53 , VAL A:54 , HIS A:139 , HOH A:864 , HOH A:1022
BINDING SITE FOR RESIDUE SO4 A 805
22
CC4
SOFTWARE
GLY B:305 , PRO B:306 , LYS B:307 , ARG B:365 , HOH B:880 , HOH B:940 , HOH B:1029
BINDING SITE FOR RESIDUE SO4 B 806
23
CC5
SOFTWARE
ARG B:66 , PRO B:68 , SER B:69 , ALA B:72 , HOH B:1051
BINDING SITE FOR RESIDUE SO4 B 807
24
CC6
SOFTWARE
ASN A:335 , PRO B:334 , ASN B:335 , ASN B:347 , PRO B:348 , HOH B:917 , HOH B:1018
BINDING SITE FOR RESIDUE SO4 B 808
25
CC7
SOFTWARE
SER B:69 , PRO B:70 , SER B:71 , HOH B:949
BINDING SITE FOR RESIDUE SO4 B 809
26
CC8
SOFTWARE
PRO B:48 , CYS B:52 , GLU B:53 , VAL B:54 , HIS B:139 , HOH B:1030
BINDING SITE FOR RESIDUE SO4 B 810
27
CC9
SOFTWARE
MAN A:477 , SER B:409 , ASN B:412 , HOH B:918
BINDING SITE FOR RESIDUE SO4 B 811
28
DC1
SOFTWARE
TYR A:154 , GLU A:184 , HIS A:318 , HOH A:902
BINDING SITE FOR RESIDUE GOL A 701
29
DC2
SOFTWARE
GLU A:159 , GLU A:166 , GLY A:170 , ARG A:447 , HOH A:976
BINDING SITE FOR RESIDUE GOL A 702
30
DC3
SOFTWARE
GLN A:304 , TYR A:431 , TRP A:436 , ASN A:437 , NAG A:596
BINDING SITE FOR RESIDUE GOL A 703
31
DC4
SOFTWARE
TYR B:154 , GLU B:184 , HIS B:318 , HOH B:912
BINDING SITE FOR RESIDUE GOL B 704
32
DC5
SOFTWARE
LEU B:123 , GLU B:159 , GLU B:166 , GLY B:170 , ARG B:447
BINDING SITE FOR RESIDUE GOL B 705
33
DC6
SOFTWARE
GLU A:144 , ASN A:176 , NAG A:472 , HOH A:1092
BINDING SITE FOR RESIDUE GOL B 706
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: HIS_ACID_PHOSPHAT_1 (A:54-68,B:54-68)
2: HIS_ACID_PHOSPHAT_2 (A:312-328,B:312-328)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIS_ACID_PHOSPHAT_1
PS00616
Histidine acid phosphatases phosphohistidine signature.
PHYB_ASPAW
73-87
4
A:54-68
B:54-68
2
HIS_ACID_PHOSPHAT_2
PS00778
Histidine acid phosphatases active site signature.
PHYB_ASPAW
331-347
4
A:312-328
B:312-328
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qfxa_ (A:)
1b: SCOP_d1qfxb_ (B:)
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Classes
(
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(
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Folds
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(
)
Superfamilies
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Histidine acid phosphatase
(24)
Protein domain
:
Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase)
(15)
Aspergillus niger [TaxId: 5061]
(3)
1a
d1qfxa_
A:
1b
d1qfxb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qfxA02 (A:36-63,A:121-198,A:285-331,A:356-460)
1b: CATH_1qfxB02 (B:36-63,B:121-200,B:285-331,B:356-460)
View:
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Aspergillus niger. Organism_taxid: 5061. Strain: nw205
(1)
1a
1qfxA02
A:36-63,A:121-198,A:285-331,A:356-460
1b
1qfxB02
B:36-63,B:121-200,B:285-331,B:356-460
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_His_Phos_2_1qfxB01 (B:53-385)
1b: PFAM_His_Phos_2_1qfxB02 (B:53-385)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
PGM
(50)
Family
:
His_Phos_2
(19)
Aspergillus awamori
(1)
1a
His_Phos_2-1qfxB01
B:53-385
1b
His_Phos_2-1qfxB02
B:53-385
[
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]
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