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1QFX
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (315 KB)
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(1)
Title
:
PH 2.5 ACID PHOSPHATASE FROM ASPERGILLUS NIGER
Authors
:
D. Kostrewa, M. Wyss, A. D'Arcy, A. P. G. M. Van Loon
Date
:
15 Apr 99 (Deposition) - 19 Apr 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Phosphomonoesterase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kostrewa, M. Wyss, A. D'Arcy, A. P. Van Loon
Crystal Structure Of Aspergillus Niger Ph 2. 5 Acid Phosphatase At 2. 4 A Resolution.
J. Mol. Biol. V. 288 965 1999
[
close entry info
]
Hetero Components
(5, 33)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GOL
6
Ligand/Ion
GLYCEROL
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
11
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:296 , ALA A:297 , THR A:300 , LEU A:432 , TRP A:436 , GOL A:703 , HOH A:928 , HOH A:1110
BINDING SITE FOR RESIDUE NAG A 596
02
AC2
SOFTWARE
ASN A:180 , ASN A:437 , ASN A:439 , HOH A:898 , HOH A:1075 , THR B:441 , NAG B:739
BINDING SITE FOR RESIDUE NAG A 739
03
AC3
SOFTWARE
GLY A:143 , ASN A:172 , ASN A:176 , PRO A:450 , ILE A:451 , NAG A:473 , HOH A:827 , HOH A:967 , HOH A:988 , GOL B:706
BINDING SITE FOR RESIDUE NAG A 472
04
AC4
SOFTWARE
CYS A:109 , ILE A:451 , CYS A:453 , NAG A:472 , BMA A:474 , HOH A:967 , HOH A:1031
BINDING SITE FOR RESIDUE NAG A 473
05
AC5
SOFTWARE
NAG A:473 , MAN A:475 , MAN A:478 , HOH A:963
BINDING SITE FOR RESIDUE BMA A 474
06
AC6
SOFTWARE
BMA A:474 , MAN A:476 , HOH A:1076 , NAG B:596
BINDING SITE FOR RESIDUE MAN A 475
07
AC7
SOFTWARE
MAN A:475 , MAN A:477 , ASN B:412 , NAG B:596
BINDING SITE FOR RESIDUE MAN A 476
08
AC8
SOFTWARE
MAN A:476 , ASN B:412 , LYS B:413 , SO4 B:811
BINDING SITE FOR RESIDUE MAN A 477
09
AC9
SOFTWARE
BMA A:474
BINDING SITE FOR RESIDUE MAN A 478
10
BC1
SOFTWARE
MAN A:475 , MAN A:476 , ASN B:296 , THR B:300 , TYR B:431 , LEU B:432 , TRP B:436 , HOH B:938
BINDING SITE FOR RESIDUE NAG B 596
11
BC2
SOFTWARE
THR A:441 , NAG A:739 , HOH A:1060 , HOH A:1082 , ASN B:180 , ASN B:437 , ASN B:439 , HOH B:908 , HOH B:1102 , HOH B:1127
BINDING SITE FOR RESIDUE NAG B 739
12
BC3
SOFTWARE
TYR B:110 , GLY B:143 , ASN B:172 , ASN B:176 , PRO B:450 , ILE B:451 , NAG B:473 , HOH B:839 , HOH B:976 , HOH B:997 , HOH B:1062
BINDING SITE FOR RESIDUE NAG B 472
13
BC4
SOFTWARE
CYS B:109 , TYR B:110 , ILE B:451 , CYS B:453 , NAG B:472 , BMA B:474 , HOH B:972 , HOH B:976 , HOH B:1039
BINDING SITE FOR RESIDUE NAG B 473
14
BC5
SOFTWARE
CYS B:453 , NAG B:473 , MAN B:475 , MAN B:478 , HOH B:972 , HOH B:1067
BINDING SITE FOR RESIDUE BMA B 474
15
BC6
SOFTWARE
BMA B:474
BINDING SITE FOR RESIDUE MAN B 475
16
BC7
SOFTWARE
BMA B:474
BINDING SITE FOR RESIDUE MAN B 478
17
BC8
SOFTWARE
GLY A:305 , PRO A:306 , LYS A:307 , ARG A:365 , HOH A:870 , HOH A:930 , HOH A:1021
BINDING SITE FOR RESIDUE SO4 A 801
18
BC9
SOFTWARE
ARG A:66 , PRO A:68 , SER A:69 , ALA A:72 , PHE A:246 , HOH A:1106
BINDING SITE FOR RESIDUE SO4 A 802
19
CC1
SOFTWARE
PRO A:334 , ASN A:335 , ASN A:347 , PRO A:348 , HOH A:907 , HOH A:1010 , ASN B:335
BINDING SITE FOR RESIDUE SO4 A 803
20
CC2
SOFTWARE
SER A:69 , PRO A:70 , SER A:71 , HOH A:1121
BINDING SITE FOR RESIDUE SO4 A 804
21
CC3
SOFTWARE
PRO A:48 , GLU A:53 , VAL A:54 , HIS A:139 , HOH A:864 , HOH A:1022
BINDING SITE FOR RESIDUE SO4 A 805
22
CC4
SOFTWARE
GLY B:305 , PRO B:306 , LYS B:307 , ARG B:365 , HOH B:880 , HOH B:940 , HOH B:1029
BINDING SITE FOR RESIDUE SO4 B 806
23
CC5
SOFTWARE
ARG B:66 , PRO B:68 , SER B:69 , ALA B:72 , HOH B:1051
BINDING SITE FOR RESIDUE SO4 B 807
24
CC6
SOFTWARE
ASN A:335 , PRO B:334 , ASN B:335 , ASN B:347 , PRO B:348 , HOH B:917 , HOH B:1018
BINDING SITE FOR RESIDUE SO4 B 808
25
CC7
SOFTWARE
SER B:69 , PRO B:70 , SER B:71 , HOH B:949
BINDING SITE FOR RESIDUE SO4 B 809
26
CC8
SOFTWARE
PRO B:48 , CYS B:52 , GLU B:53 , VAL B:54 , HIS B:139 , HOH B:1030
BINDING SITE FOR RESIDUE SO4 B 810
27
CC9
SOFTWARE
MAN A:477 , SER B:409 , ASN B:412 , HOH B:918
BINDING SITE FOR RESIDUE SO4 B 811
28
DC1
SOFTWARE
TYR A:154 , GLU A:184 , HIS A:318 , HOH A:902
BINDING SITE FOR RESIDUE GOL A 701
29
DC2
SOFTWARE
GLU A:159 , GLU A:166 , GLY A:170 , ARG A:447 , HOH A:976
BINDING SITE FOR RESIDUE GOL A 702
30
DC3
SOFTWARE
GLN A:304 , TYR A:431 , TRP A:436 , ASN A:437 , NAG A:596
BINDING SITE FOR RESIDUE GOL A 703
31
DC4
SOFTWARE
TYR B:154 , GLU B:184 , HIS B:318 , HOH B:912
BINDING SITE FOR RESIDUE GOL B 704
32
DC5
SOFTWARE
LEU B:123 , GLU B:159 , GLU B:166 , GLY B:170 , ARG B:447
BINDING SITE FOR RESIDUE GOL B 705
33
DC6
SOFTWARE
GLU A:144 , ASN A:176 , NAG A:472 , HOH A:1092
BINDING SITE FOR RESIDUE GOL B 706
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HIS_ACID_PHOSPHAT_1 (A:54-68,B:54-68)
2: HIS_ACID_PHOSPHAT_2 (A:312-328,B:312-328)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIS_ACID_PHOSPHAT_1
PS00616
Histidine acid phosphatases phosphohistidine signature.
PHYB_ASPAW
73-87
2
A:54-68
B:54-68
2
HIS_ACID_PHOSPHAT_2
PS00778
Histidine acid phosphatases active site signature.
PHYB_ASPAW
331-347
2
A:312-328
B:312-328
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qfxa_ (A:)
1b: SCOP_d1qfxb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Histidine acid phosphatase
(24)
Protein domain
:
Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase)
(15)
Aspergillus niger [TaxId: 5061]
(3)
1a
d1qfxa_
A:
1b
d1qfxb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qfxA02 (A:36-63,A:121-198,A:285-331,A:356-460)
1b: CATH_1qfxB02 (B:36-63,B:121-200,B:285-331,B:356-460)
View:
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Aspergillus niger. Organism_taxid: 5061. Strain: nw205
(1)
1a
1qfxA02
A:36-63,A:121-198,A:285-331,A:356-460
1b
1qfxB02
B:36-63,B:121-200,B:285-331,B:356-460
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_His_Phos_2_1qfxB01 (B:53-385)
1b: PFAM_His_Phos_2_1qfxB02 (B:53-385)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
PGM
(50)
Family
:
His_Phos_2
(19)
Aspergillus awamori
(1)
1a
His_Phos_2-1qfxB01
B:53-385
1b
His_Phos_2-1qfxB02
B:53-385
[
close Pfam info
]
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