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1QFW
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
TERNARY COMPLEX OF HUMAN CHORIONIC GONADOTROPIN WITH FV ANTI ALPHA SUBUNIT AND FV ANTI BETA SUBUNIT
Authors
:
M. Tegoni, S. Spinelli, C. Cambillau
Date
:
15 Apr 99 (Deposition) - 26 Apr 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,H,I,L,M
Biol. Unit 1: A,B,H,I,L,M (1x)
Keywords
:
Glycoprotein Hormone, Stimulation Of Production Of Progesterone, Fvs Specifically Directed Against Alpha And Beta Subunit, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Tegoni, S. Spinelli, M. Verhoeyen, P. Davis, C. Cambillau
Crystal Structure Of A Ternary Complex Between Human Chorionic Gonadotropin (Hcg) And Two Fv Fragments Specific For The Alpha And Beta-Subunits.
J. Mol. Biol. V. 289 1375 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:52 , VAL A:53 , VAL B:62 , PHE B:64 , ALA B:83 , SER M:226
BINDING SITE FOR RESIDUE NAG A 93
2
AC2
SOFTWARE
ALA A:23 , PRO A:24 , ILE A:25 , LEU A:26 , VAL A:68 , ASN A:78 , GLN I:201
BINDING SITE FOR RESIDUE NAG A 94
[
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014586 (K2R, chain B, )
2: VAR_015232 (P4M, chain B, )
3: VAR_015233 (R8W, chain B, )
4: VAR_015234 (R10H, chain B, )
5: VAR_014587 (T15I, chain B, )
6: VAR_014588 (N77D, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014586
K
22
R
CGHB_HUMAN
Polymorphism
6518
B
K
2
R
2
UniProt
VAR_015232
P
24
M
CGHB_HUMAN
Unclassified
---
B
P
4
M
3
UniProt
VAR_015233
R
28
W
CGHB_HUMAN
Polymorphism
---
B
R
8
W
4
UniProt
VAR_015234
R
30
H
CGHB_HUMAN
Polymorphism
---
B
R
10
H
5
UniProt
VAR_014587
T
35
I
CGHB_HUMAN
Polymorphism
6515
B
T
15
I
6
UniProt
VAR_014588
N
97
D
CGHB_HUMAN
Polymorphism
6519
B
N
77
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: GLYCO_HORMONE_ALPHA_3 (A:7-92)
2: GLYCO_HORMONE_ALPHA_1 (A:28-40)
3: GLYCO_HORMONE_BETA_1 (B:34-40,B:34-40)
4: GLYCO_HORMONE_ALPHA_2 (A:78-91)
5: GLYCO_HORMONE_BETA_2 (B:83-110,B:83-110)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCO_HORMONE_ALPHA_3
PS50277
Glycoprotein hormones alpha chain family profile.
GLHA_HUMAN
31-116
1
A:7-92
2
GLYCO_HORMONE_ALPHA_1
PS00779
Glycoprotein hormones alpha chain signature 1.
GLHA_HUMAN
52-64
1
A:28-40
3
GLYCO_HORMONE_BETA_1
PS00261
Glycoprotein hormones beta chain signature 1.
CGB3_HUMAN
54-60
1
B:34-40
CGB7_HUMAN
54-60
1
B:34-40
4
GLYCO_HORMONE_ALPHA_2
PS00780
Glycoprotein hormones alpha chain signature 2.
GLHA_HUMAN
102-115
1
A:78-91
5
GLYCO_HORMONE_BETA_2
PS00689
Glycoprotein hormones beta chain signature 2.
CGB3_HUMAN
103-130
1
B:83-110
CGB7_HUMAN
103-130
1
B:83-110
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:6-6)
Exon 1.3 (A:6-67)
Exon 1.4 (A:68-92)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000369582
1
ENSE00001450387
chr6:
87804824-87804731
94
GLHA_HUMAN
-
0
0
-
-
1.2
ENST00000369582
2
ENSE00000798150
chr6:
87797925-87797831
95
GLHA_HUMAN
1-30
30
1
A:6-6
1
1.3
ENST00000369582
3
ENSE00000798149
chr6:
87796152-87795968
185
GLHA_HUMAN
30-91
62
1
A:6-67
62
1.4
ENST00000369582
4
ENSE00000798148
chr6:
87795551-87795216
336
GLHA_HUMAN
92-116
25
1
A:68-92
25
[
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]
SCOP Domains
(6, 6)
Info
All SCOP Domains
1a: SCOP_d1qfwi_ (I:)
2a: SCOP_d1qfwh_ (H:)
3a: SCOP_d1qfwl_ (L:)
4a: SCOP_d1qfwm_ (M:)
5a: SCOP_d1qfwa_ (A:)
6a: SCOP_d1qfwb_ (B:)
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Classes
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
(58)
1a
d1qfwi_
I:
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
2a
d1qfwh_
H:
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 2 [TaxId: 10090]
(28)
3a
d1qfwl_
L:
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1qfwm_
M:
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Gonadodropin/Follitropin
(16)
Protein domain
:
Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha)
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
5a
d1qfwa_
A:
Protein domain
:
Gonadotropin B chain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
6a
d1qfwb_
B:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1qfwB00 (B:2-112)
1b: CATH_1qfwA00 (A:6-92)
2a: CATH_1qfwH00 (H:3-117)
2b: CATH_1qfwL00 (L:1-114)
2c: CATH_1qfwM00 (M:201-308)
2d: CATH_1qfwI00 (I:201-321)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
1qfwB00
B:2-112
1b
1qfwA00
A:6-92
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1qfwH00
H:3-117
2b
1qfwL00
L:1-114
2c
1qfwM00
M:201-308
2d
1qfwI00
I:201-321
[
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]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hormone_6_1qfwA01 (A:6-92)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cystine-knot
(56)
Family
:
Hormone_6
(2)
Homo sapiens (Human)
(2)
1a
Hormone_6-1qfwA01
A:6-92
[
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Chain H
Chain I
Chain L
Chain M
Asymmetric Unit 1
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