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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1QFM
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
PROLYL OLIGOPEPTIDASE FROM PORCINE MUSCLE
Authors
:
V. Fulop
Date
:
12 Apr 99 (Deposition) - 13 May 99 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Prolyl Oligopeptidase, Amnesia, Alpha/Beta-Hydrolase, Beta-Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Fulop, Z. Bocskei, L. Polgar
Prolyl Oligopeptidase: An Unusual Beta-Propeller Domain Regulates Proteolysis.
Cell(Cambridge, Mass. ) V. 94 161 1998
[
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
2a: S-OXY CYSTEINE (CSXa)
2b: S-OXY CYSTEINE (CSXb)
2c: S-OXY CYSTEINE (CSXc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: 1-HYDROXY-1-THIO-GLYCEROL (SGLa)
4b: 1-HYDROXY-1-THIO-GLYCEROL (SGLb)
5a: MONOTHIOGLYCEROL (SGMa)
5b: MONOTHIOGLYCEROL (SGMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
2
Mod. Amino Acid
3-SULFINOALANINE
2
CSX
3
Mod. Amino Acid
S-OXY CYSTEINE
3
GOL
4
Ligand/Ion
GLYCEROL
4
SGL
2
Ligand/Ion
1-HYDROXY-1-THIO-GLYCEROL
5
SGM
2
Ligand/Ion
MONOTHIOGLYCEROL
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:473 , SER A:554 , ASN A:555 , VAL A:580 , TRP A:595 , HIS A:680 , HOH A:838
BINDING SITE FOR RESIDUE SGL A 781
2
AC2
SOFTWARE
CSX A:255 , ILE A:591 , TRP A:595 , ARG A:643 , HOH A:838 , HOH A:1473 , HOH A:1586
BINDING SITE FOR RESIDUE SGL A 782
3
AC3
SOFTWARE
CYS A:78 , HIS A:79 , PHE A:80 , TYR A:385 , SER A:386 , HOH A:1212 , HOH A:1460
BINDING SITE FOR RESIDUE SGM A 783
4
AC4
SOFTWARE
PRO A:443 , CYS A:532 , GLU A:535
BINDING SITE FOR RESIDUE SGM A 784
5
AC5
SOFTWARE
ILE A:118 , LEU A:119 , SER A:120 , ASP A:121 , ASP A:446 , ASN A:522 , ASN A:525 , HOH A:1163 , HOH A:1418
BINDING SITE FOR RESIDUE GOL A 790
6
AC6
SOFTWARE
ALA A:226 , GLU A:227 , PHE A:228 , TRP A:262 , ILE A:276 , LYS A:281 , HOH A:1238 , HOH A:1529
BINDING SITE FOR RESIDUE GOL A 791
7
AC7
SOFTWARE
TRP A:150 , VAL A:151 , GLU A:169 , ARG A:170 , VAL A:171 , SER A:197 , HOH A:1021
BINDING SITE FOR RESIDUE GOL A 792
8
AC8
SOFTWARE
PRO A:7 , ASP A:8 , VAL A:9 , TRP A:30 , GLN A:38 , ALA A:41 , PHE A:42 , HOH A:929 , HOH A:959 , HOH A:1412 , HOH A:1507
BINDING SITE FOR RESIDUE GOL A 793
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PPCE_PIG_001 (A29H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PPCE_PIG_001
*
A
29
H
PPCE_PIG
---
---
A
A
29
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PRO_ENDOPEP_SER (A:529-559)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
PPCE_PIG
529-559
1
A:529-559
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1qfma1 (A:1-430)
2a: SCOP_d1qfma2 (A:431-710)
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Classes
(
)
(
)
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Peptidase/esterase 'gauge' domain
(47)
Family
:
Prolyl oligopeptidase, N-terminal domain
(29)
Protein domain
:
Prolyl oligopeptidase, N-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
1a
d1qfma1
A:1-430
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Prolyl oligopeptidase, C-terminal domain
(28)
Protein domain
:
Prolyl oligopeptidase, C-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
2a
d1qfma2
A:431-710
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1qfmA01 (A:1-73,A:427-705)
2a: CATH_1qfmA02 (A:74-426)
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)
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(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pig (Sus scrofa)
(22)
1a
1qfmA01
A:1-73,A:427-705
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
Prolyl oligopeptidase, N-terminal domain
(21)
Pig (Sus scrofa)
(11)
2a
1qfmA02
A:74-426
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_S9_1qfmA01 (A:482-707)
2a: PFAM_Peptidase_S9_N_1qfmA02 (A:7-423)
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Organisms
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)
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)
Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S9
(57)
Sus scrofa (Pig)
(11)
1a
Peptidase_S9-1qfmA01
A:482-707
Clan
:
Beta_propeller
(192)
Family
:
Peptidase_S9_N
(11)
Sus scrofa (Pig)
(9)
2a
Peptidase_S9_N-1qfmA02
A:7-423
[
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]
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Chain A
Asymmetric Unit 1
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