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1QF8
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
TRUNCATED FORM OF CASEIN KINASE II BETA SUBUNIT (2-182) FROM HOMO SAPIENS
Authors
:
L. Chantalat, D. Leroy, O. Filhol, A. Nueda, M. J. Benitez, E. Chambaz, C. Cochet, O. Dideberg
Date
:
07 Apr 99 (Deposition) - 19 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Casein Kinase Beta Subunit (1-182), Ser/Thr Protein Kinase, Zn Finger, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Chantalat, D. Leroy, O. Filhol, A. Nueda, M. J. Benitez, E. M. Chambaz, C. Cochet, O. Dideberg
Crystal Structure Of The Human Protein Kinase Ck2 Regulatory Subunit Reveals Its Zinc Finger-Mediated Dimerization.
Embo J. V. 18 2930 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
2
Ligand/Ion
ZINC ION
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: ZF1 (AUTHOR)
5: ZF2 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:109 , CYS A:114 , CYS A:137 , CYS A:140
BINDING SITE FOR RESIDUE ZN A 216
2
AC2
SOFTWARE
CYS B:109 , CYS B:114 , CYS B:137 , CYS B:140
BINDING SITE FOR RESIDUE ZN B 216
3
AC3
SOFTWARE
ASP A:28 , HOH A:246 , HOH A:249 , HOH A:258 , HOH A:260 , HOH A:278
BINDING SITE FOR RESIDUE MG A 217
4
ZF1
AUTHOR
CYS A:109 , CYS A:114 , CYS A:137 , CYS A:140
ZINC FINGER MOTIF CHAIN A
5
ZF2
AUTHOR
CYS B:109 , CYS B:114 , CYS B:137 , CYS B:140
ZINC FINGER MOTIF CHAIN B
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CK2_BETA (A:109-140,B:109-140)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CK2_BETA
PS01101
Casein kinase II regulatory subunit signature.
CSK2B_HUMAN
109-140
2
A:109-140
B:109-140
[
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Exons
(5, 10)
Info
All Exons
Exon 1.13 (A:7-24 | B:6-24)
Exon 1.15e (A:25-59 | B:25-58)
Exon 1.15j (A:59-97 (gaps) | B:67-97)
Exon 1.15p (A:98-123 | B:98-123)
Exon 1.15r (A:123-179 | B:123-176)
View:
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All Exon Boundaries
1: Boundary 1.12u/1.13
2: Boundary 1.13/1.15e
3: Boundary 1.15e/1.15j
4: Boundary 1.15j/1.15p
5: Boundary 1.15p/1.15r
6: Boundary 1.15r/1.15t
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.12u
ENST00000400110
12u
ENSE00001723915
HSCHR6_MHC_QBL:31624378-31624510
133
CSK2B_HUMAN
-
0
0
-
-
1.13
ENST00000400110
13
ENSE00002150158
HSCHR6_MHC_QBL:31624844-31624926
83
CSK2B_HUMAN
1-24
24
2
A:7-24
B:6-24
18
19
1.15e
ENST00000400110
15e
ENSE00001622533
HSCHR6_MHC_QBL:31625891-31625993
103
CSK2B_HUMAN
25-59
35
2
A:25-59
B:25-58
35
34
1.15j
ENST00000400110
15j
ENSE00001756289
HSCHR6_MHC_QBL:31626562-31626677
116
CSK2B_HUMAN
59-97
39
2
A:59-97 (gaps)
B:67-97
39
31
1.15p
ENST00000400110
15p
ENSE00002150315
HSCHR6_MHC_QBL:31627120-31627195
76
CSK2B_HUMAN
98-123
26
2
A:98-123
B:98-123
26
26
1.15r
ENST00000400110
15r
ENSE00001673157
HSCHR6_MHC_QBL:31627342-31627531
190
CSK2B_HUMAN
123-186
64
2
A:123-179
B:123-176
57
54
1.15t
ENST00000400110
15t
ENSE00001798282
HSCHR6_MHC_QBL:31627859-31628093
235
CSK2B_HUMAN
186-215
30
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qf8a_ (A:)
1b: SCOP_d1qf8b_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Casein kinase II beta subunit
(7)
Family
:
Casein kinase II beta subunit
(7)
Protein domain
:
Casein kinase II beta subunit
(7)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1qf8a_
A:
1b
d1qf8b_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qf8A01 (A:7-107)
1b: CATH_1qf8B01 (B:7-107)
2a: CATH_1qf8A02 (A:108-179)
2b: CATH_1qf8B02 (B:108-167)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
protein kinase ck2 holoenzyme, chain C, domain 1
(3)
Homologous Superfamily
:
protein kinase ck2 holoenzyme, chain C, domain 1
(3)
Human (Homo sapiens)
(2)
1a
1qf8A01
A:7-107
1b
1qf8B01
B:7-107
Class
:
Mainly Beta
(13760)
Architecture
:
Single Sheet
(341)
Topology
:
N-terminal domain of TfIIb
(166)
Homologous Superfamily
:
[code=2.20.25.20, no name defined]
(3)
Human (Homo sapiens)
(2)
2a
1qf8A02
A:108-179
2b
1qf8B02
B:108-167
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_CK_II_beta_1qf8B01 (B:8-176)
1b: PFAM_CK_II_beta_1qf8B02 (B:8-176)
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: CK_II_beta]
(4)
Family
:
CK_II_beta
(4)
Homo sapiens (Human)
(2)
1a
CK_II_beta-1qf8B01
B:8-176
1b
CK_II_beta-1qf8B02
B:8-176
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Asymmetric Unit 1
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