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1QDU
Biol. Unit 3
Info
Asym.Unit (227 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (76 KB)
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Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE-8 WITH THE TRIPEPTIDE KETONE INHIBITOR ZEVD-DCBMK
Authors
:
H. Blanchard, M. G. Grutter
Date
:
10 Jul 99 (Deposition) - 10 Jul 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,T,U,V,W,X,Y
Biol. Unit 1: A,B,C,D,T,U (1x)
Biol. Unit 2: E,F,G,H,V,W (1x)
Biol. Unit 3: I,J,K,L,X,Y (1x)
Keywords
:
Apoptosis, Cysteine Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Blanchard, L. Kodandapani, P. R. Mittl, S. D. Marco, J. F. Krebs, J. C. Wu, K. J. Tomaselli, M. G. Grutter
The Three-Dimensional Structure Of Caspase-8: An Initiator Enzyme In Apoptosis.
Structure Fold. Des. V. 7 1125 1999
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLOROMETHANE (0QEa)
1b: CHLOROMETHANE (0QEb)
1c: CHLOROMETHANE (0QEc)
1d: CHLOROMETHANE (0QEd)
1e: CHLOROMETHANE (0QEe)
1f: CHLOROMETHANE (0QEf)
2a: BENZYL CHLOROCARBONATE (PHQa)
2b: BENZYL CHLOROCARBONATE (PHQb)
2c: BENZYL CHLOROCARBONATE (PHQc)
2d: BENZYL CHLOROCARBONATE (PHQd)
2e: BENZYL CHLOROCARBONATE (PHQe)
2f: BENZYL CHLOROCARBONATE (PHQf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0QE
2
Mod. Amino Acid
CHLOROMETHANE
2
PHQ
2
Mod. Amino Acid
BENZYL CHLOROCARBONATE
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Sites
(2, 2)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ARG I:179 , HIS I:237 , GLY I:238 , GLN I:283 , CYS I:285 , SER J:339 , TYR J:340 , ARG J:341 , PRO J:343
BINDING SITE FOR CHAIN X OF PHQ-GLU-VAL-ASP- DICHLOROMETHYLKETONE INHIBITOR
2
AC6
SOFTWARE
ARG K:179 , HIS K:237 , GLY K:238 , GLN K:283 , CYS K:285 , SER L:339 , TYR L:340 , ARG L:341 , HOH Y:104
BINDING SITE FOR CHAIN Y OF PHQ-GLU-VAL-ASP- DICHLOROMETHYLKETONE INHIBITOR
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020127 (H204H, chain I/K, )
2: VAR_014204 (R175BW, chain I/K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020127
D
285
H
CASP8_HUMAN
Polymorphism
1045485
I/K
H
204
H
2
UniProt
VAR_014204
R
248
W
CASP8_HUMAN
Disease (CASP8D)
17860424
I/K
R
175B
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (I:161-289,K:161-289)
2: CASPASE_HIS (I:224-238,K:224-238)
3: CASPASE_CYS (I:276-287,K:276-287)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP8_HUMAN
232-364
2
-
-
-
-
I:161-289
K:161-289
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP8_HUMAN
304-318
2
-
-
-
-
I:224-238
K:224-238
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP8_HUMAN
351-362
2
-
-
-
-
I:276-287
K:276-287
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1qdu_1 (A:,B:)
1b: SCOP_d1qdu_3 (E:,F:)
1c: SCOP_d1qdu_4 (G:,H:)
1d: SCOP_d1qdu_5 (I:,J:)
1e: SCOP_d1qdu_6 (K:,L:)
1f: SCOP_d1qdu_2 (C:,D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Caspase-8
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1qdu.1
A:,B:
1b
d1qdu.3
E:,F:
1c
d1qdu.4
G:,H:
1d
d1qdu.5
I:,J:
1e
d1qdu.6
K:,L:
1f
d1qdu.2
C:,D:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1qduA00 (A:149-299)
1b: CATH_1qduC00 (C:149-299)
1c: CATH_1qduE00 (E:149-299)
1d: CATH_1qduG00 (G:149-299)
1e: CATH_1qduI00 (I:149-299)
1f: CATH_1qduK00 (K:149-299)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
1a
1qduA00
A:149-299
1b
1qduC00
C:149-299
1c
1qduE00
E:149-299
1d
1qduG00
G:149-299
1e
1qduI00
I:149-299
1f
1qduK00
K:149-299
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Peptidase_C14_1qduL01 (L:318-400)
1b: PFAM_Peptidase_C14_1qduL02 (L:318-400)
1c: PFAM_Peptidase_C14_1qduL03 (L:318-400)
1d: PFAM_Peptidase_C14_1qduL04 (L:318-400)
1e: PFAM_Peptidase_C14_1qduL05 (L:318-400)
1f: PFAM_Peptidase_C14_1qduL06 (L:318-400)
1g: PFAM_Peptidase_C14_1qduL07 (L:318-400)
1h: PFAM_Peptidase_C14_1qduL08 (L:318-400)
1i: PFAM_Peptidase_C14_1qduL09 (L:318-400)
1j: PFAM_Peptidase_C14_1qduL10 (L:318-400)
1k: PFAM_Peptidase_C14_1qduL11 (L:318-400)
1l: PFAM_Peptidase_C14_1qduL12 (L:318-400)
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Clans
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Organisms
(
)
(
)
Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Homo sapiens (Human)
(51)
1a
Peptidase_C14-1qduL01
L:318-400
1b
Peptidase_C14-1qduL02
L:318-400
1c
Peptidase_C14-1qduL03
L:318-400
1d
Peptidase_C14-1qduL04
L:318-400
1e
Peptidase_C14-1qduL05
L:318-400
1f
Peptidase_C14-1qduL06
L:318-400
1g
Peptidase_C14-1qduL07
L:318-400
1h
Peptidase_C14-1qduL08
L:318-400
1i
Peptidase_C14-1qduL09
L:318-400
1j
Peptidase_C14-1qduL10
L:318-400
1k
Peptidase_C14-1qduL11
L:318-400
1l
Peptidase_C14-1qduL12
L:318-400
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Asym.Unit (227 KB)
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