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1QDB
Biol. Unit 2
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Asym.Unit (284 KB)
Biol.Unit 1 (182 KB)
Biol.Unit 2 (189 KB)
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(1)
Title
:
CYTOCHROME C NITRITE REDUCTASE
Authors
:
O. Einsle, A. Messerschmidt, P. Stach, R. Huber, P. M. H. Kroneck
Date
:
19 May 99 (Deposition) - 18 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
C-Type Cytochrome Lysine-Coordinated Heme Nitrite Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Einsle, A. Messerschmidt, P. Stach, G. P. Bourenkov, H. D. Bartunik, R. Huber, P. M. Kroneck
Structure Of Cytochrome C Nitrite Reductase.
Nature V. 400 476 1999
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
2n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
2o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
HEM
10
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC6 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC8 (SOFTWARE)
06: CC5 (SOFTWARE)
07: CC6 (SOFTWARE)
08: CC7 (SOFTWARE)
09: CC8 (SOFTWARE)
10: CC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
GLU C:216 , TYR C:217 , LYS C:279 , GLN C:281 , HOH C:1543 , HOH C:1546
BINDING SITE FOR RESIDUE CA C 520
02
AC6
SOFTWARE
PHE C:91 , ARG C:113 , TYR C:217 , GLN C:281 , HIS C:282 , HEM C:515 , HOH C:1599 , HOH C:1647 , HOH C:2025 , HOH C:2112
BINDING SITE FOR RESIDUE SO4 C 1503
03
BC2
SOFTWARE
ASN C:250 , ARG C:418 , HOH C:1766
BINDING SITE FOR RESIDUE SO4 C 1508
04
BC3
SOFTWARE
LYS C:367 , LYS C:429 , ARG C:431 , HOH C:1607 , HOH C:1610 , HOH C:1713 , HOH C:1747
BINDING SITE FOR RESIDUE SO4 C 1509
05
BC8
SOFTWARE
ILE A:292 , HIS A:293 , SER A:331 , CYS A:332 , CYS A:335 , HIS A:336 , LEU A:343 , LYS A:350 , PHE A:410 , HEM A:518 , HOH A:1533 , HOH A:1634 , HIS B:336 , GLY C:311
BINDING SITE FOR RESIDUE HEM A 519
06
CC5
SOFTWARE
TYR C:95 , ASN C:96 , PRO C:98 , ASP C:107 , ASN C:108 , SER C:111 , ARG C:113 , THR C:114 , LEU C:125 , CYS C:129 , CYS C:132 , LYS C:133 , CYS C:213 , HIS C:214 , TYR C:217 , HIS C:282 , ALA C:404 , HIS C:406 , HEM C:517 , SO4 C:1503 , HOH C:1554 , HOH C:1579 , HOH C:1591 , HOH C:1602 , HOH C:1628 , HOH C:1647
BINDING SITE FOR RESIDUE HEM C 515
07
CC6
SOFTWARE
TYR C:56 , GLN C:59 , TRP C:63 , GLY C:166 , CYS C:167 , CYS C:170 , HIS C:171 , LEU C:178 , HIS C:202 , ARG C:206 , MET C:305 , TYR C:307 , TYR C:315 , SER C:316 , HIS C:318 , HEM C:517 , HOH C:1715 , HOH C:1846 , HOH C:2016
BINDING SITE FOR RESIDUE HEM C 516
08
CC7
SOFTWARE
TYR C:69 , PRO C:98 , ARG C:99 , GLY C:100 , HIS C:101 , TYR C:103 , ALA C:104 , ASP C:107 , CYS C:132 , LYS C:133 , ILE C:165 , VAL C:209 , CYS C:210 , GLN C:212 , CYS C:213 , HIS C:214 , CYS C:300 , HIS C:304 , MET C:305 , VAL C:320 , LYS C:321 , GLU C:322 , HEM C:515 , HEM C:516 , HEM C:518 , HOH C:1575
BINDING SITE FOR RESIDUE HEM C 517
09
CC8
SOFTWARE
PRO C:98 , HIS C:214 , TRP C:288 , HIS C:293 , VAL C:298 , SER C:299 , CYS C:300 , CYS C:303 , HIS C:304 , GLU C:322 , ASN C:323 , PRO C:324 , HIS C:406 , TYR C:409 , PHE C:410 , HIS C:411 , HEM C:517 , HEM C:519 , HOH C:1673
BINDING SITE FOR RESIDUE HEM C 518
10
CC9
SOFTWARE
GLY B:311 , ILE C:292 , HIS C:293 , LYS C:296 , SER C:331 , CYS C:332 , CYS C:335 , HIS C:336 , LYS C:350 , PHE C:410 , HEM C:518 , HOH C:1511 , HOH C:1571 , HOH C:1923
BINDING SITE FOR RESIDUE HEM C 519
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (C:162-341)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
NRFA_SULDE
162-341
2
-
-
C:162-341
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1qdba_ (A:)
1b: SCOP_d1qdbb_ (B:)
1c: SCOP_d1qdbc_ (C:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
Cytochrome c nitrite reductase
(7)
Sulfurospirillum deleyianum [TaxId: 65553]
(1)
1a
d1qdba_
A:
1b
d1qdbb_
B:
1c
d1qdbc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Cytochrom_C552_1qdbC01 (C:48-497)
1b: PFAM_Cytochrom_C552_1qdbC02 (C:48-497)
1c: PFAM_Cytochrom_C552_1qdbC03 (C:48-497)
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)
Clan
:
Multiheme_cytos
(34)
Family
:
Cytochrom_C552
(6)
Sulfurospirillum deleyianum
(1)
1a
Cytochrom_C552-1qdbC01
C:48-497
1b
Cytochrom_C552-1qdbC02
C:48-497
1c
Cytochrom_C552-1qdbC03
C:48-497
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Asym.Unit (284 KB)
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