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1QCO
Asym. Unit
Info
Asym.Unit (149 KB)
Biol.Unit 1 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FUMARYLACETOACETATE HYDROLASE COMPLEXED WITH FUMARATE AND ACETOACETATE
Authors
:
D. E. Timm, H. A. Mueller, P. Bhanumoorthy, J. M. Harp, G. J. Bunick
Date
:
17 May 99 (Deposition) - 07 Jun 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Mixed Beta Sandwich Roll, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Timm, H. A. Mueller, P. Bhanumoorthy, J. M. Harp, G. J. Bunick
Crystal Structure And Mechanism Of A Carbon-Carbon Bond Hydrolase.
Structure Fold. Des. V. 7 1023 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETOACETIC ACID (AAEa)
1b: ACETOACETIC ACID (AAEb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: FUMARIC ACID (FUMa)
3b: FUMARIC ACID (FUMb)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
4e: NICKEL (II) ION (NIe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AAE
2
Ligand/Ion
ACETOACETIC ACID
2
CA
2
Ligand/Ion
CALCIUM ION
3
FUM
2
Ligand/Ion
FUMARIC ACID
4
NI
5
Ligand/Ion
NICKEL (II) ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:626 , GLU B:699 , GLU B:701 , ASP B:733 , AAE B:1011
BINDING SITE FOR RESIDUE CA B 1001
02
AC2
SOFTWARE
ASP A:126 , GLU A:199 , GLU A:201 , ASP A:233 , AAE A:1010
BINDING SITE FOR RESIDUE CA A 1002
03
AC3
SOFTWARE
HOH A:1250 , HIS B:654 , HOH B:1202 , HOH B:1203 , HOH B:1226
BINDING SITE FOR RESIDUE NI B 1003
04
AC4
SOFTWARE
ASP B:511 , HIS B:895 , HOH B:1150 , HOH B:1250 , HOH B:1260 , HOH B:1277
BINDING SITE FOR RESIDUE NI B 1004
05
AC5
SOFTWARE
ASP A:399 , HIS B:722 , HOH B:1012 , HOH B:1013 , HOH B:1274 , HOH B:1280
BINDING SITE FOR RESIDUE NI B 1005
06
AC6
SOFTWARE
ASP A:11 , HIS A:395 , HOH A:1121 , HOH A:1238 , HOH A:1260 , HOH A:1270
BINDING SITE FOR RESIDUE NI A 1006
07
AC7
SOFTWARE
HIS A:222 , GLY B:499 , HOH B:1035 , HOH B:1271 , HOH B:1278
BINDING SITE FOR RESIDUE NI B 1007
08
AC8
SOFTWARE
TYR A:128 , VAL A:137 , ARG A:142 , GLN A:240 , TYR A:244 , AAE A:1010 , HOH A:1018 , HOH A:1255 , HOH A:1258 , PRO B:746
BINDING SITE FOR RESIDUE FUM A 1008
09
AC9
SOFTWARE
PRO A:246 , TYR B:628 , VAL B:637 , ARG B:642 , GLN B:740 , TYR B:744 , AAE B:1011 , HOH B:1269 , HOH B:1272
BINDING SITE FOR RESIDUE FUM B 1009
10
BC1
SOFTWARE
ASP A:126 , PHE A:127 , TYR A:128 , HIS A:133 , TYR A:159 , GLU A:199 , GLU A:201 , ASP A:233 , LYS A:253 , GLY A:349 , THR A:350 , CA A:1002 , FUM A:1008 , HOH A:1051
BINDING SITE FOR RESIDUE AAE A 1010
11
BC2
SOFTWARE
ASP B:626 , PHE B:627 , TYR B:628 , HIS B:633 , TYR B:659 , GLU B:699 , GLU B:701 , ASP B:733 , LYS B:753 , GLY B:849 , THR B:850 , CA B:1001 , FUM B:1009 , HOH B:1055
BINDING SITE FOR RESIDUE AAE B 1011
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1qcoa1 (A:1-118)
1b: SCOP_d1qcob1 (B:499-618)
2a: SCOP_d1qcoa2 (A:119-417)
2b: SCOP_d1qcob2 (B:619-917)
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Classes
(
)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Fumarylacetoacetate hydrolase, FAH, N-terminal domain
(5)
Family
:
Fumarylacetoacetate hydrolase, FAH, N-terminal domain
(5)
Protein domain
:
Fumarylacetoacetate hydrolase, FAH, N-terminal domain
(5)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d1qcoa1
A:1-118
1b
d1qcob1
B:499-618
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAH
(16)
Superfamily
:
FAH
(16)
Family
:
FAH
(13)
Protein domain
:
Fumarylacetoacetate hydrolase, FAH, C-terminal domain
(5)
Mouse (Mus musculus) [TaxId: 10090]
(5)
2a
d1qcoa2
A:119-417
2b
d1qcob2
B:619-917
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qcoA02 (A:116-401)
1b: CATH_1qcoB02 (B:616-901)
2a: CATH_1qcoA01 (A:2-114)
2b: CATH_1qcoB01 (B:502-614)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Fumarylacetoacetate hydrolase; domain 2
(15)
Homologous Superfamily
:
Fumarylacetoacetate hydrolase, domain 2
(15)
House mouse (Mus musculus)
(5)
1a
1qcoA02
A:116-401
1b
1qcoB02
B:616-901
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
Fumarylacetoacetate hydrolase, FAH, N-terminal domain.
(5)
House mouse (Mus musculus)
(5)
2a
1qcoA01
A:2-114
2b
1qcoB01
B:502-614
[
close CATH info
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_FAA_hydrolase_1qcoB01 (B:623-913)
1b: PFAM_FAA_hydrolase_1qcoB02 (B:623-913)
2a: PFAM_DUF1969_1qcoB03 (B:515-618)
2b: PFAM_DUF1969_1qcoB04 (B:515-618)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
FAH
(11)
Family
:
FAA_hydrolase
(11)
Mus musculus (Mouse)
(1)
1a
FAA_hydrolase-1qcoB01
B:623-913
1b
FAA_hydrolase-1qcoB02
B:623-913
Clan
:
no clan defined [family: DUF1969]
(1)
Family
:
DUF1969
(1)
Mus musculus (Mouse)
(1)
2a
DUF1969-1qcoB03
B:515-618
2b
DUF1969-1qcoB04
B:515-618
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]
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Asymmetric Unit 1
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