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1QBZ
Asym. Unit
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Asym.Unit (138 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (266 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE SIV GP41 ECTODOMAIN AT 1.47 A
Authors
:
Z. -N. Yang, T. C. Mueser, J. Kaufman, S. J. Stahl, P. T. Wingfield, C. C. H
Date
:
28 Apr 99 (Deposition) - 17 May 99 (Release) - 16 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.47
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Keywords
:
Siv, Hiv, Gp41, Membrane Fusion, Peptide Inhibitor, Siv Envelope Glycoprotein Gp41, Envelope Glycoprotein
(Keyword Search:
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Reference
:
Z. N. Yang, T. C. Mueser, J. Kaufman, S. J. Stahl, P. T. Wingfield, C. C. Hyde
The Crystal Structure Of The Siv Gp41 Ectodomain At 1. 47 A Resolution.
J. Struct. Biol. V. 126 131 1999
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
3b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
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No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
HG
2
Ligand/Ion
MERCURY (II) ION
3
MRD
2
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:41 , MET A:141 , HOH A:8063
BINDING SITE FOR RESIDUE HG A 8001
2
AC2
SOFTWARE
HOH B:8046 , HOH B:8052
BINDING SITE FOR RESIDUE HG B 8002
3
AC3
SOFTWARE
TRP C:98 , ASN C:100 , PRO C:105 , HOH C:8027 , HOH C:8056
BINDING SITE FOR RESIDUE CL C 8003
4
AC4
SOFTWARE
TRP B:98 , ASN B:100 , HOH B:8026
BINDING SITE FOR RESIDUE CL B 8004
5
AC5
SOFTWARE
LYS C:62 , HOH C:8016 , HOH C:8043
BINDING SITE FOR RESIDUE CL C 8005
6
AC6
SOFTWARE
LEU A:56 , TRP A:59 , THR B:111 , LYS B:118 , LYS B:146
BINDING SITE FOR RESIDUE MRD A 7001
7
AC7
SOFTWARE
LEU B:56 , TRP B:59 , THR C:111 , GLU C:114 , TRP C:115 , LYS C:118
BINDING SITE FOR RESIDUE MRD C 7002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1qbza_ (A:)
1b: SCOP_d1qbzb_ (B:)
1c: SCOP_d1qbzc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Virus ectodomain
(48)
Family
:
Virus ectodomain
(44)
Protein domain
:
Retrovius gp41 protease-resistant core
(35)
Simian immunodeficiency virus [TaxId: 11723]
(10)
1a
d1qbza_
A:
1b
d1qbzb_
B:
1c
d1qbzc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1qbzA00 (A:28-147)
1b: CATH_1qbzB00 (B:28-149)
1c: CATH_1qbzC00 (C:28-149)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.210, no name defined]
(35)
Simian immunodeficiency virus. Organism_taxid: 11723. Strain: mac239.
(1)
1a
1qbzA00
A:28-147
1b
1qbzB00
B:28-149
1c
1qbzC00
C:28-149
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
Biol.Unit 2 (266 KB)
Header - Biol.Unit 2
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