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1QBK
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (175 KB)
Biol.Unit 2 (346 KB)
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(1)
Title
:
STRUCTURE OF THE KARYOPHERIN BETA2-RAN GPPNHP NUCLEAR TRANSPORT COMPLEX
Authors
:
Y. M. Chook, G. Blobel
Date
:
23 Apr 99 (Deposition) - 01 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : B,C
Biol. Unit 1: B,C (1x)
Biol. Unit 2: B,C (2x)
Keywords
:
Heat Repeats, Nuclear Transport Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. M. Chook, G. Blobel
Structure Of The Nuclear Transport Complex Karyopherin-Beta2-Ran X Gppnhp.
Nature V. 399 230 1999
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 29)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
MSE
27
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR C:24 , THR C:42 , GNP C:218
BINDING SITE FOR RESIDUE MG C 217
2
AC2
SOFTWARE
GLY C:19 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , THR C:24 , THR C:25 , PHE C:35 , GLU C:36 , LYS C:37 , LYS C:38 , TYR C:39 , ALA C:41 , THR C:42 , GLY C:68 , ASN C:122 , LYS C:123 , ASP C:125 , SER C:150 , ALA C:151 , LYS C:152 , MG C:217
BINDING SITE FOR RESIDUE GNP C 218
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014455 (D26E, chain B, )
2: VAR_051900 (R95I, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014455
D
34
E
TNPO1_HUMAN
Polymorphism
25661
B
D
26
E
2
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
C
R
95
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IMPORTIN_B_NT (B:33-101)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
TNPO1_HUMAN
41-109
1
B:33-101
[
close PROSITE info
]
Exons
(28, 28)
Info
All Exons
Exon 1.5 (B:3-35)
Exon 1.6c (B:36-61)
Exon 1.7c (B:61-111)
Exon 1.8a (B:111-146)
Exon 1.10b (B:147-191 (gaps))
Exon 1.12a (B:191-218)
Exon 1.13 (B:219-259)
Exon 1.14 (B:260-299)
Exon 1.15 (B:299-319)
Exon 1.16c (B:320-376 (gaps))
Exon 1.17b (B:376-427)
Exon 1.18a (B:427-502)
Exon 1.19 (B:502-559)
Exon 1.20 (B:560-588)
Exon 1.21b (B:589-624)
Exon 1.22a (B:625-677)
Exon 1.23 (B:678-707)
Exon 1.24 (B:707-740)
Exon 1.25 (B:740-772)
Exon 1.26 (B:772-797)
Exon 1.27b (B:797-830)
Exon 1.28 (B:831-855)
Exon 1.29c (B:856-890)
Exon 2.2a (C:8-32)
Exon 2.2d (C:33-61)
Exon 2.3 (C:61-103)
Exon 2.5b (C:103-165)
Exon 2.6c (C:166-197)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.5
02: Boundary 1.5/1.6c
03: Boundary 1.6c/1.7c
04: Boundary 1.7c/1.8a
05: Boundary 1.8a/1.10b
06: Boundary 1.10b/1.12a
07: Boundary 1.12a/1.13
08: Boundary 1.13/1.14
09: Boundary 1.14/1.15
10: Boundary 1.15/1.16c
11: Boundary 1.16c/1.17b
12: Boundary 1.17b/1.18a
13: Boundary 1.18a/1.19
14: Boundary 1.19/1.20
15: Boundary 1.20/1.21b
16: Boundary 1.21b/1.22a
17: Boundary 1.22a/1.23
18: Boundary 1.23/1.24
19: Boundary 1.24/1.25
20: Boundary 1.25/1.26
21: Boundary 1.26/1.27b
22: Boundary 1.27b/1.28
23: Boundary 1.28/1.29c
24: Boundary 1.29c/1.30f
25: Boundary -/2.2a
26: Boundary 2.2a/2.2d
27: Boundary 2.2d/2.3
28: Boundary 2.3/2.5b
29: Boundary 2.5b/2.6c
30: Boundary 2.6c/2.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000337273
1a
ENSE00002137257
chr5:
72112139-72112579
441
TNPO1_HUMAN
1-5
5
0
-
-
1.5
ENST00000337273
5
ENSE00001678683
chr5:
72144212-72144325
114
TNPO1_HUMAN
6-43
38
1
B:3-35
33
1.6c
ENST00000337273
6c
ENSE00000752304
chr5:
72147071-72147146
76
TNPO1_HUMAN
44-69
26
1
B:36-61
26
1.7c
ENST00000337273
7c
ENSE00000534707
chr5:
72151601-72151750
150
TNPO1_HUMAN
69-119
51
1
B:61-111
51
1.8a
ENST00000337273
8a
ENSE00000752327
chr5:
72157635-72157741
107
TNPO1_HUMAN
119-154
36
1
B:111-146
36
1.10b
ENST00000337273
10b
ENSE00000752440
chr5:
72161423-72161556
134
TNPO1_HUMAN
155-199
45
1
B:147-191 (gaps)
45
1.12a
ENST00000337273
12a
ENSE00001659385
chr5:
72168466-72168547
82
TNPO1_HUMAN
199-226
28
1
B:191-218
28
1.13
ENST00000337273
13
ENSE00001619386
chr5:
72171442-72171564
123
TNPO1_HUMAN
227-267
41
1
B:219-259
41
1.14
ENST00000337273
14
ENSE00001752263
chr5:
72173055-72173173
119
TNPO1_HUMAN
268-307
40
1
B:260-299
40
1.15
ENST00000337273
15
ENSE00001797615
chr5:
72178294-72178354
61
TNPO1_HUMAN
307-327
21
1
B:299-319
21
1.16c
ENST00000337273
16c
ENSE00001805396
chr5:
72178891-72179059
169
TNPO1_HUMAN
328-384
57
1
B:320-376 (gaps)
57
1.17b
ENST00000337273
17b
ENSE00001752488
chr5:
72182897-72183049
153
TNPO1_HUMAN
384-435
52
1
B:376-427
52
1.18a
ENST00000337273
18a
ENSE00001670694
chr5:
72183905-72184130
226
TNPO1_HUMAN
435-510
76
1
B:427-502
76
1.19
ENST00000337273
19
ENSE00001603550
chr5:
72185613-72185784
172
TNPO1_HUMAN
510-567
58
1
B:502-559
58
1.20
ENST00000337273
20
ENSE00001611908
chr5:
72187637-72187723
87
TNPO1_HUMAN
568-596
29
1
B:560-588
29
1.21b
ENST00000337273
21b
ENSE00001762530
chr5:
72188966-72189073
108
TNPO1_HUMAN
597-632
36
1
B:589-624
36
1.22a
ENST00000337273
22a
ENSE00001717735
chr5:
72189204-72189362
159
TNPO1_HUMAN
633-685
53
1
B:625-677
53
1.23
ENST00000337273
23
ENSE00001743796
chr5:
72189443-72189530
88
TNPO1_HUMAN
686-715
30
1
B:678-707
30
1.24
ENST00000337273
24
ENSE00001660046
chr5:
72192285-72192383
99
TNPO1_HUMAN
715-748
34
1
B:707-740
34
1.25
ENST00000337273
25
ENSE00001687148
chr5:
72192883-72192978
96
TNPO1_HUMAN
748-780
33
1
B:740-772
33
1.26
ENST00000337273
26
ENSE00001743811
chr5:
72195833-72195908
76
TNPO1_HUMAN
780-805
26
1
B:772-797
26
1.27b
ENST00000337273
27b
ENSE00001600924
chr5:
72196801-72196900
100
TNPO1_HUMAN
805-838
34
1
B:797-830
34
1.28
ENST00000337273
28
ENSE00001730129
chr5:
72199536-72199610
75
TNPO1_HUMAN
839-863
25
1
B:831-855
25
1.29c
ENST00000337273
29c
ENSE00001718138
chr5:
72201130-72201272
143
TNPO1_HUMAN
864-898
35
1
B:856-890
35
1.30f
ENST00000337273
30f
ENSE00001925200
chr5:
72204536-72212560
8025
TNPO1_HUMAN
-
0
0
-
-
2.2a
ENST00000392369
2a
ENSE00001511608
chr12:
131356783-131357174
392
RAN_HUMAN
1-32
32
1
C:8-32
25
2.2d
ENST00000392369
2d
ENSE00000903701
chr12:
131357381-131357465
85
RAN_HUMAN
33-61
29
1
C:33-61
29
2.3
ENST00000392369
3
ENSE00000903703
chr12:
131357548-131357673
126
RAN_HUMAN
61-103
43
1
C:61-103
43
2.5b
ENST00000392369
5b
ENSE00000903705
chr12:
131359091-131359278
188
RAN_HUMAN
103-165
63
1
C:103-165
63
2.6c
ENST00000392369
6c
ENSE00000903707
chr12:
131360157-131360327
171
RAN_HUMAN
166-222
57
1
C:166-197
32
2.7c
ENST00000392369
7c
ENSE00001511600
chr12:
131360427-131360826
400
RAN_HUMAN
223-236
14
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1qbkb_ (B:)
2a: SCOP_d1qbkc_ (C:)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
Karyopherin beta2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1qbkb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Ran
(37)
Human (Homo sapiens) [TaxId: 9606]
(29)
2a
d1qbkc_
C:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1qbkC00 (C:8-197)
2a: CATH_1qbkB00 (B:3-890)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1qbkC00
C:8-197
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Human (Homo sapiens)
(30)
2a
1qbkB00
B:3-890
[
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Ras_1qbkC01 (C:12-170)
2a: PFAM_HEAT_EZ_1qbkB01 (B:411-465)
3a: PFAM_IBN_N_1qbkB02 (B:33-101)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1qbkC01
C:12-170
Clan
:
TPR
(230)
Family
:
HEAT_EZ
(8)
Homo sapiens (Human)
(7)
2a
HEAT_EZ-1qbkB01
B:411-465
Family
:
IBN_N
(25)
Homo sapiens (Human)
(16)
3a
IBN_N-1qbkB02
B:33-101
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