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1QBD
Theor. Model
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Theoretical Model (55 KB)
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(1)
Title
:
HEXOSAMINIDASE BETA CHAIN, GLYCOSYL HYDROLASE FAMILY 20, THEORETICAL MODEL
Authors
:
I. Tews, A. Perrakis, A. Oppenheim, Z. Dauter, K. S. Wilson, C. E. Vorgias
Date
:
07 Jun 96 (Deposition) - 11 Jan 97 (Release) - 11 Jan 97 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Glycosyl Hydrolase, Hexosaminidase, Sandhoff Disease, Ba8- Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Tews, A. Perrakis, A. Oppenheim, Z. Dauter, K. S. Wilson, C. E. Vorgias
Bacterial Chitobiase Structure Provides Insight Into Catalytic Mechanism And The Basis Of Tay-Sachs Disease.
Nat. Struct. Biol. V. 3 638 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003249 (I207V, chain A, )
2: VAR_011704 (S255R, chain A, )
3: VAR_003250 (C309Y, chain A, )
4: VAR_003251 (P417L, chain A, )
5: VAR_003252 (Y456S, chain A, )
6: VAR_011705 (P504S, chain A, )
7: VAR_003253 (R505Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003249
I
207
V
HEXB_HUMAN
Polymorphism
10805890
A
I
207
V
2
UniProt
VAR_011704
S
255
R
HEXB_HUMAN
Disease (GM2G2)
---
A
S
255
R
3
UniProt
VAR_003250
C
309
Y
HEXB_HUMAN
Disease (GM2G2)
---
A
C
309
Y
4
UniProt
VAR_003251
P
417
L
HEXB_HUMAN
Disease (GM2G2)
28942073
A
P
417
L
5
UniProt
VAR_003252
Y
456
S
HEXB_HUMAN
Disease (GM2G2)
---
A
Y
456
S
6
UniProt
VAR_011705
P
504
S
HEXB_HUMAN
Disease (GM2G2)
---
A
P
504
S
7
UniProt
VAR_003253
R
505
Q
HEXB_HUMAN
Disease (GM2G2)
---
A
R
505
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(9, 9)
Info
All Exons
Exon 1.6 (A:193-223)
Exon 1.7b (A:224-257)
Exon 1.8a (A:258-301)
Exon 1.9a (A:301-361)
Exon 1.10a (A:361-390 (gaps))
Exon 1.11 (A:390-414)
Exon 1.12a (A:415-473)
Exon 1.13b (A:473-503)
Exon 1.14a (A:503-516)
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All Exon Boundaries
01: Boundary 1.5/1.6
02: Boundary 1.6/1.7b
03: Boundary 1.7b/1.8a
04: Boundary 1.8a/1.9a
05: Boundary 1.9a/1.10a
06: Boundary 1.10a/1.11
07: Boundary 1.11/1.12a
08: Boundary 1.12a/1.13b
09: Boundary 1.13b/1.14a
10: Boundary 1.14a/1.15c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000261416
2a
ENSE00001083771
chr5:
73980969-73981384
416
HEXB_HUMAN
1-100
100
0
-
-
1.3a
ENST00000261416
3a
ENSE00000753141
chr5:
73985153-73985298
146
HEXB_HUMAN
100-149
50
0
-
-
1.4b
ENST00000261416
4b
ENSE00000753143
chr5:
73989464-73989529
66
HEXB_HUMAN
149-171
23
0
-
-
1.5
ENST00000261416
5
ENSE00000459979
chr5:
73992518-73992564
47
HEXB_HUMAN
171-186
16
0
-
-
1.6
ENST00000261416
6
ENSE00000753190
chr5:
73992821-73992931
111
HEXB_HUMAN
187-223
37
1
A:193-223
31
1.7b
ENST00000261416
7b
ENSE00001031132
chr5:
74001044-74001145
102
HEXB_HUMAN
224-257
34
1
A:224-257
34
1.8a
ENST00000261416
8a
ENSE00001031135
chr5:
74009331-74009460
130
HEXB_HUMAN
258-301
44
1
A:258-301
44
1.9a
ENST00000261416
9a
ENSE00001031133
chr5:
74011335-74011515
181
HEXB_HUMAN
301-361
61
1
A:301-361
61
1.10a
ENST00000261416
10a
ENSE00001083763
chr5:
74012412-74012498
87
HEXB_HUMAN
361-390
30
1
A:361-390 (gaps)
30
1.11
ENST00000261416
11
ENSE00001083768
chr5:
74014116-74014188
73
HEXB_HUMAN
390-414
25
1
A:390-414
25
1.12a
ENST00000261416
12a
ENSE00001083759
chr5:
74014622-74014796
175
HEXB_HUMAN
415-473
59
1
A:415-473
59
1.13b
ENST00000261416
13b
ENSE00001263703
chr5:
74016253-74016343
91
HEXB_HUMAN
473-503
31
1
A:473-503
31
1.14a
ENST00000261416
14a
ENSE00001083760
chr5:
74016468-74016572
105
HEXB_HUMAN
503-538
36
1
A:503-516
14
1.15c
ENST00000261416
15c
ENSE00001171600
chr5:
74016943-74017113
171
HEXB_HUMAN
538-556
19
0
-
-
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Chain A
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