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1QBC
Theor. Model
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Theoretical Model (55 KB)
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(1)
Title
:
HEXOSAMINIDASE ALPHA CHAIN, GLYCOSYL HYDROLASE FAMILY 20, THEORETICAL MODEL
Authors
:
I. Tews, A. Perrakis, A. Oppenheim, Z. Dauter, K. S. Wilson, C. E. Vorgias
Date
:
07 Jun 96 (Deposition) - 11 Jan 97 (Release) - 11 Jan 97 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Glycosyl Hydrolase, Hexosaminidase, Tay-Sachs Disease, Ba8- Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Tews, A. Perrakis, A. Oppenheim, Z. Dauter, K. S. Wilson, C. E. Vorgias
Bacterial Chitobiase Structure Provides Insight Into Catalytic Mechanism And The Basis Of Tay-Sachs Disease.
Nat. Struct. Biol. V. 3 638 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(40, 40)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003205 (R166G, chain A, )
02: VAR_003206 (R170Q, chain A, )
03: VAR_003207 (R170W, chain A, )
04: VAR_003208 (R178C, chain A, )
05: VAR_003209 (R178H, chain A, )
06: VAR_003210 (R178L, chain A, )
07: VAR_003211 (Y180H, chain A, )
08: VAR_003212 (V192L, chain A, )
09: VAR_003213 (N196S, chain A, )
10: VAR_003214 (K197T, chain A, )
11: VAR_003215 (V200M, chain A, )
12: VAR_003216 (H204R, chain A, )
13: VAR_003217 (S210F, chain A, )
14: VAR_003218 (F211S, chain A, )
15: VAR_022440 (S226F, chain A, )
16: VAR_003219 (R247W, chain A, )
17: VAR_003220 (R249W, chain A, )
18: VAR_003221 (G250D, chain A, )
19: VAR_003222 (G250S, chain A, )
20: VAR_003223 (R252H, chain A, )
21: VAR_017188 (R252L, chain A, )
22: VAR_003224 (D258H, chain A, )
23: VAR_022441 (G269D, chain A, )
24: VAR_003225 (G269S, chain A, )
25: VAR_003226 (S279P, chain A, )
26: VAR_058477 (S293I, chain A, )
27: VAR_017189 (N295S, chain A, )
28: VAR_003227 (M301R, chain A, )
29: VAR_022442 (D314V, chain A, )
30: VAR_003230 (I335F, chain A, )
31: VAR_003232 (V391M, chain A, )
32: VAR_003234 (W420C, chain A, )
33: VAR_003235 (V436V, chain A, )
34: VAR_003236 (G454S, chain A, )
35: VAR_003237 (G455R, chain A, )
36: VAR_003238 (C458Y, chain A, )
37: VAR_003239 (W474C, chain A, )
38: VAR_003240 (E482K, chain A, )
39: VAR_003241 (L484Q, chain A, )
40: VAR_003242 (W485R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003205
R
166
G
HEXA_HUMAN
Disease (GM2G1)
---
A
R
166
G
02
UniProt
VAR_003206
R
170
Q
HEXA_HUMAN
Disease (GM2G1)
---
A
R
170
Q
03
UniProt
VAR_003207
R
170
W
HEXA_HUMAN
Disease (GM2G1)
---
A
R
170
W
04
UniProt
VAR_003208
R
178
C
HEXA_HUMAN
Disease (GM2G1)
---
A
R
178
C
05
UniProt
VAR_003209
R
178
H
HEXA_HUMAN
Disease (GM2G1)
---
A
R
178
H
06
UniProt
VAR_003210
R
178
L
HEXA_HUMAN
Disease (GM2G1)
28941770
A
R
178
L
07
UniProt
VAR_003211
Y
180
H
HEXA_HUMAN
Disease (GM2G1)
28941771
A
Y
180
H
08
UniProt
VAR_003212
V
192
L
HEXA_HUMAN
Disease (GM2G1)
---
A
V
192
L
09
UniProt
VAR_003213
N
196
S
HEXA_HUMAN
Disease (GM2G1)
---
A
N
196
S
10
UniProt
VAR_003214
K
197
T
HEXA_HUMAN
Disease (GM2G1)
---
A
K
197
T
11
UniProt
VAR_003215
V
200
M
HEXA_HUMAN
Disease (GM2G1)
1800429
A
V
200
M
12
UniProt
VAR_003216
H
204
R
HEXA_HUMAN
Disease (GM2G1)
---
A
H
204
R
13
UniProt
VAR_003217
S
210
F
HEXA_HUMAN
Disease (GM2G1)
---
A
S
210
F
14
UniProt
VAR_003218
F
211
S
HEXA_HUMAN
Disease (GM2G1)
---
A
F
211
S
15
UniProt
VAR_022440
S
226
F
HEXA_HUMAN
Disease (GM2G1)
---
A
S
226
F
16
UniProt
VAR_003219
R
247
W
HEXA_HUMAN
Polymorphism
121907970
A
R
247
W
17
UniProt
VAR_003220
R
249
W
HEXA_HUMAN
Unclassified
---
A
R
249
W
18
UniProt
VAR_003221
G
250
D
HEXA_HUMAN
Disease (GM2G1)
---
A
G
250
D
19
UniProt
VAR_003222
G
250
S
HEXA_HUMAN
Disease (GM2G1)
---
A
G
250
S
20
UniProt
VAR_003223
R
252
H
HEXA_HUMAN
Disease (GM2G1)
---
A
R
252
H
21
UniProt
VAR_017188
R
252
L
HEXA_HUMAN
Disease (GM2G1)
---
A
R
252
L
22
UniProt
VAR_003224
D
258
H
HEXA_HUMAN
Disease (GM2G1)
---
A
D
258
H
23
UniProt
VAR_022441
G
269
D
HEXA_HUMAN
Disease (GM2G1)
---
A
G
269
D
24
UniProt
VAR_003225
G
269
S
HEXA_HUMAN
Disease (GM2G1)
---
A
G
269
S
25
UniProt
VAR_003226
S
279
P
HEXA_HUMAN
Disease (GM2G1)
---
A
S
279
P
26
UniProt
VAR_058477
S
293
I
HEXA_HUMAN
Polymorphism
1054374
A
S
293
I
27
UniProt
VAR_017189
N
295
S
HEXA_HUMAN
Disease (GM2G1)
199578185
A
N
295
S
28
UniProt
VAR_003227
M
301
R
HEXA_HUMAN
Disease (GM2G1)
---
A
M
301
R
29
UniProt
VAR_022442
D
314
V
HEXA_HUMAN
Disease (GM2G1)
---
A
D
314
V
30
UniProt
VAR_003230
I
335
F
HEXA_HUMAN
Disease (GM2G1)
---
A
I
335
F
31
UniProt
VAR_003232
V
391
M
HEXA_HUMAN
Disease (GM2G1)
---
A
V
391
M
32
UniProt
VAR_003234
W
420
C
HEXA_HUMAN
Disease (GM2G1)
---
A
W
420
C
33
UniProt
VAR_003235
I
436
V
HEXA_HUMAN
Polymorphism
1800431
A
V
436
V
34
UniProt
VAR_003236
G
454
S
HEXA_HUMAN
Disease (GM2G1)
---
A
G
454
S
35
UniProt
VAR_003237
G
455
R
HEXA_HUMAN
Disease (GM2G1)
---
A
G
455
R
36
UniProt
VAR_003238
C
458
Y
HEXA_HUMAN
Disease (GM2G1)
---
A
C
458
Y
37
UniProt
VAR_003239
W
474
C
HEXA_HUMAN
Disease (GM2G1)
---
A
W
474
C
38
UniProt
VAR_003240
E
482
K
HEXA_HUMAN
Disease (GM2G1)
---
A
E
482
K
39
UniProt
VAR_003241
L
484
Q
HEXA_HUMAN
Disease (GM2G1)
---
A
L
484
Q
40
UniProt
VAR_003242
W
485
R
HEXA_HUMAN
Disease (GM2G1)
---
A
W
485
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(9, 9)
Info
All Exons
Exon 1.5 (A:160-190)
Exon 1.6 (A:191-224)
Exon 1.7 (A:225-269)
Exon 1.8 (A:269-329)
Exon 1.9 (A:329-358 (gaps))
Exon 1.10 (A:358-382)
Exon 1.11 (A:383-444 (gaps))
Exon 1.12 (A:444-474)
Exon 1.13 (A:474-487)
View:
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All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000268097
1a
ENSE00001945618
chr15:
72668817-72668061
757
HEXA_HUMAN
1-85
85
0
-
-
1.2b
ENST00000268097
2b
ENSE00001631603
chr15:
72648958-72648866
93
HEXA_HUMAN
85-116
32
0
-
-
1.3
ENST00000268097
3
ENSE00001630774
chr15:
72647965-72647900
66
HEXA_HUMAN
116-138
23
0
-
-
1.4
ENST00000268097
4
ENSE00001027559
chr15:
72646078-72646032
47
HEXA_HUMAN
138-153
16
0
-
-
1.5
ENST00000268097
5
ENSE00001027552
chr15:
72645519-72645409
111
HEXA_HUMAN
154-190
37
1
A:160-190
31
1.6
ENST00000268097
6
ENSE00001027556
chr15:
72643575-72643474
102
HEXA_HUMAN
191-224
34
1
A:191-224
34
1.7
ENST00000268097
7
ENSE00001027553
chr15:
72642991-72642859
133
HEXA_HUMAN
225-269
45
1
A:225-269
45
1.8
ENST00000268097
8
ENSE00001027550
chr15:
72641600-72641420
181
HEXA_HUMAN
269-329
61
1
A:269-329
61
1.9
ENST00000268097
9
ENSE00001694348
chr15:
72640475-72640389
87
HEXA_HUMAN
329-358
30
1
A:329-358 (gaps)
30
1.10
ENST00000268097
10
ENSE00001637244
chr15:
72640099-72640027
73
HEXA_HUMAN
358-382
25
1
A:358-382
25
1.11
ENST00000268097
11
ENSE00001677789
chr15:
72639051-72638868
184
HEXA_HUMAN
383-444
62
1
A:383-444 (gaps)
62
1.12
ENST00000268097
12
ENSE00001725825
chr15:
72638666-72638576
91
HEXA_HUMAN
444-474
31
1
A:444-474
31
1.13
ENST00000268097
13
ENSE00001646126
chr15:
72637891-72637787
105
HEXA_HUMAN
474-509
36
1
A:474-487
14
1.14b
ENST00000268097
14b
ENSE00001826978
chr15:
72636481-72635775
707
HEXA_HUMAN
509-529
21
0
-
-
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