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1QAT
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE DELTA COMPLEX WITH SAMARIUM (III) CHLORIDE
Authors
:
J. A. Grobler, J. H. Hurley
Date
:
02 Aug 96 (Deposition) - 12 Feb 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Lipid Degradation, Transducer, Calcium-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Grobler, L. O. Essen, R. L. Williams, J. H. Hurley
C2 Domain Conformational Changes In Phospholipase C-Delta 1.
Nat. Struct. Biol. V. 3 788 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SAMARIUM (III) ION (SMa)
1b: SAMARIUM (III) ION (SMb)
1c: SAMARIUM (III) ION (SMc)
1d: SAMARIUM (III) ION (SMd)
1e: SAMARIUM (III) ION (SMe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SM
5
Ligand/Ion
SAMARIUM (III) ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:651 , ASP A:653 , ASN A:677
BINDING SITE FOR RESIDUE SM A 1001
2
AC2
SOFTWARE
ILE B:651 , ASP B:653 , ASN B:677 , SM B:1003
BINDING SITE FOR RESIDUE SM B 1002
3
AC3
SOFTWARE
ASP B:653 , ASP B:706 , TYR B:707 , ASP B:708 , SM B:1002
BINDING SITE FOR RESIDUE SM B 1003
4
AC4
SOFTWARE
ASN A:312 , GLU A:341 , ASP A:343 , GLU A:390
BINDING SITE FOR RESIDUE SM A 1004
5
AC5
SOFTWARE
ASN B:312 , GLU B:341 , ASP B:343 , GLU B:390
BINDING SITE FOR RESIDUE SM B 1005
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PLCD1_RAT_001 (I412M, chain A/B, )
2: VAR_PLCD1_RAT_002 (T423S, chain A/B, )
3: VAR_PLCD1_RAT_004 (G668A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PLCD1_RAT_001
*
I
412
M
PLCD1_RAT
---
---
A/B
I
412
M
2
UniProt
VAR_PLCD1_RAT_002
*
T
423
S
PLCD1_RAT
---
---
A/B
T
423
S
3
UniProt
VAR_PLCD1_RAT_004
*
G
668
A
PLCD1_RAT
---
---
A/B
G
668
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PIPLC_X_DOMAIN (A:296-440,B:296-440)
2: PIPLC_Y_DOMAIN (A:492-609,B:492-609)
3: C2 (A:630-720,B:630-720)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PIPLC_X_DOMAIN
PS50007
Phosphatidylinositol-specific phospholipase X-box domain profile.
PLCD1_RAT
296-440
2
A:296-440
B:296-440
2
PIPLC_Y_DOMAIN
PS50008
Phosphatidylinositol-specific phospholipase Y-box domain profile.
PLCD1_RAT
492-609
2
A:492-609
B:492-609
3
C2
PS50004
C2 domain profile.
PLCD1_RAT
630-720
2
A:630-720
B:630-720
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1qata1 (A:206-298)
1b: SCOP_d1qatb1 (B:206-298)
2a: SCOP_d1qata2 (A:626-756)
2b: SCOP_d1qatb2 (B:626-756)
3a: SCOP_d1qata3 (A:299-625)
3b: SCOP_d1qatb3 (B:299-625)
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)
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)
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)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
EF-hand modules in multidomain proteins
(29)
Protein domain
:
Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!)
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(10)
1a
d1qata1
A:206-298
1b
d1qatb1
B:206-298
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(10)
2a
d1qata2
A:626-756
2b
d1qatb2
B:626-756
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
PLC-like phosphodiesterases
(46)
Family
:
Mammalian PLC
(12)
Protein domain
:
Phospholipase C isozyme D1 (PLC-D1)
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(10)
3a
d1qata3
A:299-625
3b
d1qatb3
B:299-625
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1qatB02 (B:293-625)
1b: CATH_1qatA02 (A:293-625)
2a: CATH_1qatA01 (A:206-292)
2b: CATH_1qatB01 (B:206-292)
3a: CATH_1qatA03 (A:626-755)
3b: CATH_1qatB03 (B:626-754)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphatidylinositol (PI) phosphodiesterase
(37)
Norway rat (Rattus norvegicus)
(10)
1a
1qatB02
B:293-625
1b
1qatA02
A:293-625
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
2a
1qatA01
A:206-292
2b
1qatB01
B:206-292
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Norway rat (Rattus norvegicus)
(20)
3a
1qatA03
A:626-755
3b
1qatB03
B:626-754
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (169 KB)
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