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1QAS
Asym. Unit
Info
Asym.Unit (172 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE DELTA 1
Authors
:
J. A. Grobler, J. H. Hurley
Date
:
02 Aug 96 (Deposition) - 12 Feb 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Lipid Degradation, Transducer, Calcium-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Grobler, L. O. Essen, R. L. Williams, J. H. Hurley
C2 Domain Conformational Changes In Phospholipase C-Delta 1.
Nat. Struct. Biol. V. 3 788 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PLCD1_RAT_001 (I412M, chain A/B, )
2: VAR_PLCD1_RAT_002 (T423S, chain A/B, )
3: VAR_PLCD1_RAT_004 (G668A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PLCD1_RAT_001
*
I
412
M
PLCD1_RAT
---
---
A/B
I
412
M
2
UniProt
VAR_PLCD1_RAT_002
*
T
423
S
PLCD1_RAT
---
---
A/B
T
423
S
3
UniProt
VAR_PLCD1_RAT_004
*
G
668
A
PLCD1_RAT
---
---
A/B
G
668
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PIPLC_X_DOMAIN (A:296-440,B:296-440)
2: PIPLC_Y_DOMAIN (A:492-609,B:492-609)
3: C2 (A:630-720,B:630-720)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PIPLC_X_DOMAIN
PS50007
Phosphatidylinositol-specific phospholipase X-box domain profile.
PLCD1_RAT
296-440
2
A:296-440
B:296-440
2
PIPLC_Y_DOMAIN
PS50008
Phosphatidylinositol-specific phospholipase Y-box domain profile.
PLCD1_RAT
492-609
2
A:492-609
B:492-609
3
C2
PS50004
C2 domain profile.
PLCD1_RAT
630-720
2
A:630-720
B:630-720
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1qasa1 (A:205-298)
1b: SCOP_d1qasb1 (B:206-298)
2a: SCOP_d1qasa2 (A:626-756)
2b: SCOP_d1qasb2 (B:626-756)
3a: SCOP_d1qasa3 (A:299-625)
3b: SCOP_d1qasb3 (B:299-625)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
EF-hand modules in multidomain proteins
(29)
Protein domain
:
Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!)
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(10)
1a
d1qasa1
A:205-298
1b
d1qasb1
B:206-298
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(10)
2a
d1qasa2
A:626-756
2b
d1qasb2
B:626-756
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
PLC-like phosphodiesterases
(46)
Family
:
Mammalian PLC
(12)
Protein domain
:
Phospholipase C isozyme D1 (PLC-D1)
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(10)
3a
d1qasa3
A:299-625
3b
d1qasb3
B:299-625
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1qasA02 (A:293-625)
1b: CATH_1qasB02 (B:293-625)
2a: CATH_1qasA01 (A:205-292)
2b: CATH_1qasB01 (B:206-292)
3a: CATH_1qasA03 (A:626-754)
3b: CATH_1qasB03 (B:626-753)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphatidylinositol (PI) phosphodiesterase
(37)
Norway rat (Rattus norvegicus)
(10)
1a
1qasA02
A:293-625
1b
1qasB02
B:293-625
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
2a
1qasA01
A:205-292
2b
1qasB01
B:206-292
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Norway rat (Rattus norvegicus)
(20)
3a
1qasA03
A:626-754
3b
1qasB03
B:626-753
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_C2_1qasB01 (B:631-720)
1b: PFAM_C2_1qasB02 (B:631-720)
2a: PFAM_efhand_like_1qasB03 (B:213-295)
2b: PFAM_efhand_like_1qasB04 (B:213-295)
3a: PFAM_PI_PLC_X_1qasB05 (B:298-441)
3b: PFAM_PI_PLC_X_1qasB06 (B:298-441)
4a: PFAM_PI_PLC_Y_1qasB07 (B:491-609)
4b: PFAM_PI_PLC_Y_1qasB08 (B:491-609)
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Clans
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)
Organisms
(
)
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)
Clan
:
C2
(71)
Family
:
C2
(34)
Rattus norvegicus (Rat)
(14)
1a
C2-1qasB01
B:631-720
1b
C2-1qasB02
B:631-720
Clan
:
EF_hand
(270)
Family
:
efhand_like
(3)
Rattus norvegicus (Rat)
(1)
2a
efhand_like-1qasB03
B:213-295
2b
efhand_like-1qasB04
B:213-295
Clan
:
PLC
(20)
Family
:
PI-PLC-X
(10)
Rattus norvegicus (Rat)
(1)
3a
PI-PLC-X-1qasB05
B:298-441
3b
PI-PLC-X-1qasB06
B:298-441
Family
:
PI-PLC-Y
(3)
Rattus norvegicus (Rat)
(1)
4a
PI-PLC-Y-1qasB07
B:491-609
4b
PI-PLC-Y-1qasB08
B:491-609
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Show PDB file:
Asym.Unit (172 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
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