PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1QAG
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (69 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ACTIN BINDING REGION OF THE DYSTROPHIN HOMOLOGUE UTROPHIN
Authors
:
N. H. Keep, S. J. Winder, C. A. Moores, S. Walke, F. L. M. Norwood, J. Kendr
Date
:
05 Mar 99 (Deposition) - 01 Jan 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Calponin Homology Domain, Domain Swapping, Actin Binding, Utrophin, Dystrophin, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. H. Keep, S. J. Winder, C. A. Moores, S. Walke, F. L. M. Norwood, J. Kendrick-Jones
Crystal Structure Of The Actin-Binding Region Of Utrophin Reveals A Head-To-Tail Dimer
Structure Fold. Des. V. 7 1539 1999
[
close entry info
]
Hetero Components
(1, 10)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 8)
Info
All PROSITE Patterns/Profiles
1: CH (A:31-135,B:31-135|A:150-252,B:150-...)
2: ACTININ_1 (A:33-42,B:33-42)
3: ACTININ_2 (A:107-131,B:107-131)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CH
PS50021
Calponin homology domain profile.
UTRO_HUMAN
31-135
150-252
4
A:31-135
B:31-135
A:150-252
B:150-252
2
ACTININ_1
PS00019
Actinin-type actin-binding domain signature 1.
UTRO_HUMAN
33-42
2
A:33-42
B:33-42
3
ACTININ_2
PS00020
Actinin-type actin-binding domain signature 2.
UTRO_HUMAN
107-131
2
A:107-131
B:107-131
[
close PROSITE info
]
Exons
(7, 14)
Info
All Exons
Exon 1.5 (A:31-47 | B:31-47)
Exon 1.6 (A:48-78 | B:48-78)
Exon 1.7 (A:79-104 | B:79-104)
Exon 1.8a (A:105-135 | B:105-135)
Exon 1.9a (A:136-193 | B:136-193)
Exon 1.10 (A:193-232 | B:193-232)
Exon 1.11 (A:232-256 | B:232-256)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3b/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8a
5: Boundary 1.8a/1.9a
6: Boundary 1.9a/1.10
7: Boundary 1.10/1.11
8: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000367545
3b
ENSE00001616860
chr6:
144612965-144613043
79
UTRO_HUMAN
1-27
27
0
-
-
1.5
ENST00000367545
5
ENSE00002157934
chr6:
144724259-144724320
62
UTRO_HUMAN
27-47
21
2
A:31-47
B:31-47
17
17
1.6
ENST00000367545
6
ENSE00001007393
chr6:
144743014-144743106
93
UTRO_HUMAN
48-78
31
2
A:48-78
B:48-78
31
31
1.7
ENST00000367545
7
ENSE00001007387
chr6:
144744685-144744762
78
UTRO_HUMAN
79-104
26
2
A:79-104
B:79-104
26
26
1.8a
ENST00000367545
8a
ENSE00001007390
chr6:
144745122-144745214
93
UTRO_HUMAN
105-135
31
2
A:105-135
B:105-135
31
31
1.9a
ENST00000367545
9a
ENSE00002192161
chr6:
144747423-144747595
173
UTRO_HUMAN
136-193
58
2
A:136-193
B:136-193
58
58
1.10
ENST00000367545
10
ENSE00002151480
chr6:
144749914-144750029
116
UTRO_HUMAN
193-232
40
2
A:193-232
B:193-232
40
40
1.11
ENST00000367545
11
ENSE00002160030
chr6:
144750717-144750877
161
UTRO_HUMAN
232-285
54
2
A:232-256
B:232-256
25
25
1.12
ENST00000367545
12
ENSE00002201322
chr6:
144757071-144757274
204
UTRO_HUMAN
286-353
68
0
-
-
1.13
ENST00000367545
13
ENSE00002142441
chr6:
144758701-144758882
182
UTRO_HUMAN
354-414
61
0
-
-
1.14
ENST00000367545
14
ENSE00002198996
chr6:
144759881-144760031
151
UTRO_HUMAN
414-464
51
0
-
-
1.15
ENST00000367545
15
ENSE00002190998
chr6:
144761488-144761607
120
UTRO_HUMAN
465-504
40
0
-
-
1.16
ENST00000367545
16
ENSE00002141411
chr6:
144765417-144765518
102
UTRO_HUMAN
505-538
34
0
-
-
1.17
ENST00000367545
17
ENSE00002192936
chr6:
144768347-144768454
108
UTRO_HUMAN
539-574
36
0
-
-
1.18
ENST00000367545
18
ENSE00002199518
chr6:
144768738-144768917
180
UTRO_HUMAN
575-634
60
0
-
-
1.19
ENST00000367545
19
ENSE00002152421
chr6:
144769736-144769905
170
UTRO_HUMAN
635-691
57
0
-
-
1.20
ENST00000367545
20
ENSE00002181234
chr6:
144772506-144772629
124
UTRO_HUMAN
691-732
42
0
-
-
1.21
ENST00000367545
21
ENSE00002143191
chr6:
144774918-144775005
88
UTRO_HUMAN
733-762
30
0
-
-
1.22
ENST00000367545
22
ENSE00002188556
chr6:
144779906-144780147
242
UTRO_HUMAN
762-842
81
0
-
-
1.23
ENST00000367545
23
ENSE00002155454
chr6:
144780310-144780490
181
UTRO_HUMAN
843-903
61
0
-
-
1.24
ENST00000367545
24
ENSE00002144259
chr6:
144782333-144782478
146
UTRO_HUMAN
903-951
49
0
-
-
1.25
ENST00000367545
25
ENSE00002172475
chr6:
144783790-144784002
213
UTRO_HUMAN
952-1022
71
0
-
-
1.26
ENST00000367545
26
ENSE00002152912
chr6:
144794856-144794969
114
UTRO_HUMAN
1023-1060
38
0
-
-
1.27
ENST00000367545
27
ENSE00002154301
chr6:
144795740-144795895
156
UTRO_HUMAN
1061-1112
52
0
-
-
1.28b
ENST00000367545
28b
ENSE00001084805
chr6:
144800948-144801118
171
UTRO_HUMAN
1113-1169
57
0
-
-
1.29
ENST00000367545
29
ENSE00001084807
chr6:
144803345-144803524
180
UTRO_HUMAN
1170-1229
60
0
-
-
1.30
ENST00000367545
30
ENSE00001084804
chr6:
144806521-144806655
135
UTRO_HUMAN
1230-1274
45
0
-
-
1.31
ENST00000367545
31
ENSE00001084840
chr6:
144808684-144808833
150
UTRO_HUMAN
1275-1324
50
0
-
-
1.32
ENST00000367545
32
ENSE00001084871
chr6:
144809809-144809970
162
UTRO_HUMAN
1325-1378
54
0
-
-
1.33
ENST00000367545
33
ENSE00001084858
chr6:
144811207-144811335
129
UTRO_HUMAN
1379-1421
43
0
-
-
1.34
ENST00000367545
34
ENSE00001084810
chr6:
144812065-144812238
174
UTRO_HUMAN
1422-1479
58
0
-
-
1.35
ENST00000367545
35
ENSE00001084809
chr6:
144814437-144814592
156
UTRO_HUMAN
1480-1531
52
0
-
-
1.36
ENST00000367545
36
ENSE00001084815
chr6:
144820393-144820563
171
UTRO_HUMAN
1532-1588
57
0
-
-
1.37
ENST00000367545
37
ENSE00001084824
chr6:
144832080-144832259
180
UTRO_HUMAN
1589-1648
60
0
-
-
1.38
ENST00000367545
38
ENSE00001309213
chr6:
144835045-144835173
129
UTRO_HUMAN
1649-1691
43
0
-
-
1.39
ENST00000367545
39
ENSE00001084800
chr6:
144835786-144835956
171
UTRO_HUMAN
1692-1748
57
0
-
-
1.40
ENST00000367545
40
ENSE00001084865
chr6:
144837365-144837523
159
UTRO_HUMAN
1749-1801
53
0
-
-
1.41
ENST00000367545
41
ENSE00001084820
chr6:
144837947-144838084
138
UTRO_HUMAN
1802-1847
46
0
-
-
1.42
ENST00000367545
42
ENSE00001084866
chr6:
144843116-144843307
192
UTRO_HUMAN
1848-1911
64
0
-
-
1.43
ENST00000367545
43
ENSE00001084863
chr6:
144844152-144844324
173
UTRO_HUMAN
1912-1969
58
0
-
-
1.44
ENST00000367545
44
ENSE00001084839
chr6:
144852188-144852338
151
UTRO_HUMAN
1969-2019
51
0
-
-
1.45
ENST00000367545
45
ENSE00001084873
chr6:
144854221-144854396
176
UTRO_HUMAN
2020-2078
59
0
-
-
1.46
ENST00000367545
46
ENSE00001312504
chr6:
144858718-144858853
136
UTRO_HUMAN
2078-2123
46
0
-
-
1.47
ENST00000367545
47
ENSE00001312804
chr6:
144860430-144860579
150
UTRO_HUMAN
2124-2173
50
0
-
-
1.48
ENST00000367545
48
ENSE00001293425
chr6:
144863931-144864006
76
UTRO_HUMAN
2174-2199
26
0
-
-
1.49
ENST00000367545
49
ENSE00001314288
chr6:
144869776-144869990
215
UTRO_HUMAN
2199-2270
72
0
-
-
1.50
ENST00000367545
50
ENSE00001294544
chr6:
144872101-144872218
118
UTRO_HUMAN
2271-2310
40
0
-
-
1.51
ENST00000367545
51
ENSE00001315483
chr6:
144875824-144876029
206
UTRO_HUMAN
2310-2378
69
0
-
-
1.52
ENST00000367545
52
ENSE00001296065
chr6:
144878293-144878447
155
UTRO_HUMAN
2379-2430
52
0
-
-
1.53
ENST00000367545
53
ENSE00001317010
chr6:
144898235-144898424
190
UTRO_HUMAN
2430-2493
64
0
-
-
1.56b
ENST00000367545
56b
ENSE00001698082
chr6:
144999542-144999714
173
UTRO_HUMAN
2494-2551
58
0
-
-
1.57
ENST00000367545
57
ENSE00001717692
chr6:
145021223-145021379
157
UTRO_HUMAN
2551-2603
53
0
-
-
1.58
ENST00000367545
58
ENSE00001084833
chr6:
145051493-145051622
130
UTRO_HUMAN
2604-2647
44
0
-
-
1.59
ENST00000367545
59
ENSE00001084870
chr6:
145069382-145069650
269
UTRO_HUMAN
2647-2736
90
0
-
-
1.60
ENST00000367545
60
ENSE00001084803
chr6:
145072942-145073088
147
UTRO_HUMAN
2737-2785
49
0
-
-
1.61b
ENST00000367545
61b
ENSE00001084801
chr6:
145075856-145075934
79
UTRO_HUMAN
2786-2812
27
0
-
-
1.62a
ENST00000367545
62a
ENSE00001084816
chr6:
145079065-145079125
61
UTRO_HUMAN
2812-2832
21
0
-
-
1.63
ENST00000367545
63
ENSE00001084862
chr6:
145093043-145093104
62
UTRO_HUMAN
2832-2853
22
0
-
-
1.64
ENST00000367545
64
ENSE00001906623
chr6:
145095426-145095500
75
UTRO_HUMAN
2853-2878
26
0
-
-
1.65
ENST00000367545
65
ENSE00001084857
chr6:
145103058-145103259
202
UTRO_HUMAN
2878-2945
68
0
-
-
1.66a
ENST00000367545
66a
ENSE00001084847
chr6:
145110330-145110415
86
UTRO_HUMAN
2945-2974
30
0
-
-
1.67
ENST00000367545
67
ENSE00001084861
chr6:
145114970-145115127
158
UTRO_HUMAN
2974-3026
53
0
-
-
1.68b
ENST00000367545
68b
ENSE00001084837
chr6:
145118960-145119126
167
UTRO_HUMAN
3027-3082
56
0
-
-
1.70
ENST00000367545
70
ENSE00001084799
chr6:
145124172-145124283
112
UTRO_HUMAN
3082-3119
38
0
-
-
1.71
ENST00000367545
71
ENSE00001084845
chr6:
145142018-145142154
137
UTRO_HUMAN
3120-3165
46
0
-
-
1.72
ENST00000367545
72
ENSE00001084869
chr6:
145148484-145148522
39
UTRO_HUMAN
3165-3178
14
0
-
-
1.73
ENST00000367545
73
ENSE00001084798
chr6:
145148747-145148812
66
UTRO_HUMAN
3178-3200
23
0
-
-
1.74b
ENST00000367545
74b
ENSE00002196262
chr6:
145149926-145149991
66
UTRO_HUMAN
3200-3222
23
0
-
-
1.75b
ENST00000367545
75b
ENSE00002163117
chr6:
145156916-145157074
159
UTRO_HUMAN
3222-3275
54
0
-
-
1.76a
ENST00000367545
76a
ENSE00001084831
chr6:
145157437-145157677
241
UTRO_HUMAN
3275-3355
81
0
-
-
1.78b
ENST00000367545
78b
ENSE00001084796
chr6:
145160309-145160420
112
UTRO_HUMAN
3356-3393
38
0
-
-
1.79
ENST00000367545
79
ENSE00002146582
chr6:
145161876-145161968
93
UTRO_HUMAN
3393-3424
32
0
-
-
1.80b
ENST00000367545
80b
ENSE00001444982
chr6:
145167941-145167963
23
UTRO_HUMAN
3424-3431
8
0
-
-
1.81b
ENST00000367545
81b
ENSE00001444981
chr6:
145172125-145174170
2046
UTRO_HUMAN
3432-3433
2
0
-
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qaga1 (A:31-151)
1b: SCOP_d1qaga2 (A:152-256)
1c: SCOP_d1qagb1 (B:31-151)
1d: SCOP_d1qagb2 (B:152-256)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
CH domain-like
(55)
Superfamily
:
Calponin-homology domain, CH-domain
(53)
Family
:
Calponin-homology domain, CH-domain
(28)
Protein domain
:
Utrophin
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1qaga1
A:31-151
1b
d1qaga2
A:152-256
1c
d1qagb1
B:31-151
1d
d1qagb2
B:152-256
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qagA01 (A:31-130)
1b: CATH_1qagB01 (B:31-130)
1c: CATH_1qagA02 (A:149-251)
1d: CATH_1qagB02 (B:149-250)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Actin-binding Protein, T-fimbrin; domain 1
(51)
Homologous Superfamily
:
Actin-binding Protein, T-fimbrin; domain 1
(51)
Human (Homo sapiens)
(39)
1a
1qagA01
A:31-130
1b
1qagB01
B:31-130
1c
1qagA02
A:149-251
1d
1qagB02
B:149-250
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_CH_1qagB01 (B:153-255)
1b: PFAM_CH_1qagB02 (B:153-255)
1c: PFAM_CH_1qagB03 (B:153-255)
1d: PFAM_CH_1qagB04 (B:153-255)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CH
(43)
Family
:
CH
(43)
Homo sapiens (Human)
(31)
1a
CH-1qagB01
B:153-255
1b
CH-1qagB02
B:153-255
1c
CH-1qagB03
B:153-255
1d
CH-1qagB04
B:153-255
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (74 KB)
Header - Asym.Unit
Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
Biol.Unit 3 (69 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1QAG
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help