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1Q8M
Biol. Unit 2
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Asym.Unit (91 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN MYELOID CELL ACTIVATING RECEPTOR TREM-1
Authors
:
S. Radaev, M. Kattah, B. Rostro, M. Colonna, P. D. Sun
Date
:
21 Aug 03 (Deposition) - 09 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
V-Type Ig-Like Domain, Immunoglobulin-Like, Immune System Receptor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Radaev, M. Kattah, B. Rostro, M. Colonna, P. D. Sun
Crystal Structure Of The Human Myeloid Cell Activating Receptor Trem-1
Structure V. 11 1527 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GSH
-1
Ligand/Ion
GLUTATHIONE
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
LYS C:28 , ARG C:130 , HOH C:2625 , LYS D:120
BINDING SITE FOR RESIDUE SO4 C 2400
2
AC7
SOFTWARE
LYS D:120 , HOH D:3705
BINDING SITE FOR RESIDUE SO4 D 2500
3
AC8
SOFTWARE
ARG C:84
BINDING SITE FOR RESIDUE SO4 C 2600
4
AC9
SOFTWARE
LYS C:120 , LYS D:28 , ARG D:130
BINDING SITE FOR RESIDUE SO4 D 3400
5
BC1
SOFTWARE
ARG D:59 , LYS D:65
BINDING SITE FOR RESIDUE SO4 D 3700
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_019333 (T25S, chain C/D, )
2: VAR_035525 (R97S, chain C/D, )
3: VAR_049949 (L135T, chain C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019333
T
25
S
TREM1_HUMAN
Polymorphism
2234237
C/D
T
25
S
2
UniProt
VAR_035525
R
97
S
TREM1_HUMAN
Unclassified
---
C/D
R
97
S
3
UniProt
VAR_049949
K
135
T
TREM1_HUMAN
Polymorphism
34727391
C/D
L
135
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1q8ma_ (A:)
1b: SCOP_d1q8mb_ (B:)
1c: SCOP_d1q8mc_ (C:)
1d: SCOP_d1q8md_ (D:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
TREM-1 (triggering receptor expressed on myeloid cells 1)
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1q8ma_
A:
1b
d1q8mb_
B:
1c
d1q8mc_
C:
1d
d1q8md_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1q8mA00 (A:16-136)
1b: CATH_1q8mB00 (B:16-136)
1c: CATH_1q8mC00 (C:16-136)
1d: CATH_1q8mD00 (D:16-136)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1q8mA00
A:16-136
1b
1q8mB00
B:16-136
1c
1q8mC00
C:16-136
1d
1q8mD00
D:16-136
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_V_set_1q8mD01 (D:20-133)
1b: PFAM_V_set_1q8mD02 (D:20-133)
1c: PFAM_V_set_1q8mD03 (D:20-133)
1d: PFAM_V_set_1q8mD04 (D:20-133)
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Clan
:
Ig
(577)
Family
:
V-set
(144)
Homo sapiens (Human)
(61)
1a
V-set-1q8mD01
D:20-133
1b
V-set-1q8mD02
D:20-133
1c
V-set-1q8mD03
D:20-133
1d
V-set-1q8mD04
D:20-133
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Asymmetric Unit 1
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Asym.Unit (91 KB)
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