PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1Q69
Asym. Unit
Info
Asym.Unit (133 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(10 )
Title
:
SOLUTION STRUCTURE OF T-CELL SURFACE GLYCOPROTEIN CD8 ALPHA CHAIN AND PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK FRAGMENTS
Authors
:
P. W. Kim, Z. Y. Sun, S. C. Blacklow, G. Wagner, M. J. Eck
Date
:
12 Aug 03 (Deposition) - 25 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Peptide-Peptide Complex, Helix-Helix Interaction, Zinc Coordination, Beta Hairpin, Membrane Protein/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. W. Kim, Z. Y. Sun, S. C. Blacklow, G. Wagner, M. J. Eck
A Zinc Clasp Structure Tethers Lck To T Cell Coreceptors Cd4 And Cd8.
Science V. 301 1725 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:194 , CYS A:196 , CYS B:20 , CYS B:23
BINDING SITE FOR RESIDUE ZN A 207
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_013463 (V28L, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013463
V
28
L
LCK_HUMAN
Unclassified
---
B
V
28
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:188-188)
Exon 1.8 (A:188-198)
Exon 1.9c (A:198-206)
Exon 2.2h (B:7-35)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9c
4: Boundary 1.9c/-
5: Boundary 2.1a/2.2h
6: Boundary 2.2h/2.3a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000283635
4a
ENSE00001897263
chr2:
87018803-87017900
904
CD8A_HUMAN
1-17
17
0
-
-
1.5b
ENST00000283635
5b
ENSE00001220182
chr2:
87017804-87017451
354
CD8A_HUMAN
17-135
119
0
-
-
1.6
ENST00000283635
6
ENSE00001011446
chr2:
87016873-87016763
111
CD8A_HUMAN
135-172
38
0
-
-
1.7
ENST00000283635
7
ENSE00001011450
chr2:
87016556-87016446
111
CD8A_HUMAN
172-209
38
1
A:188-188
1
1.8
ENST00000283635
8
ENSE00001011445
chr2:
87015683-87015653
31
CD8A_HUMAN
209-219
11
1
A:188-198
11
1.9c
ENST00000283635
9c
ENSE00001843887
chr2:
87013094-87011733
1362
CD8A_HUMAN
219-235
17
1
A:198-206
9
2.1a
ENST00000336890
1a
ENSE00001532907
chr1:
32716840-32716972
133
LCK_HUMAN
-
0
0
-
-
2.2h
ENST00000336890
2h
ENSE00002175789
chr1:
32739926-32740035
110
LCK_HUMAN
1-35
35
1
B:7-35
29
2.3a
ENST00000336890
3a
ENSE00001301511
chr1:
32740338-32740419
82
LCK_HUMAN
36-63
28
0
-
-
2.3f
ENST00000336890
3f
ENSE00001323374
chr1:
32740594-32740684
91
LCK_HUMAN
63-93
31
0
-
-
2.3h
ENST00000336890
3h
ENSE00001321874
chr1:
32740922-32741020
99
LCK_HUMAN
93-126
34
0
-
-
2.4c
ENST00000336890
4c
ENSE00001299684
chr1:
32741170-32741273
104
LCK_HUMAN
126-161
36
0
-
-
2.5
ENST00000336890
5
ENSE00001330813
chr1:
32741515-32741664
150
LCK_HUMAN
161-211
51
0
-
-
2.6b
ENST00000336890
6b
ENSE00001307776
chr1:
32741938-32742090
153
LCK_HUMAN
211-262
52
0
-
-
2.7a
ENST00000336890
7a
ENSE00001327737
chr1:
32742208-32742387
180
LCK_HUMAN
262-322
61
0
-
-
2.8b
ENST00000336890
8b
ENSE00001292351
chr1:
32745272-32745348
77
LCK_HUMAN
322-347
26
0
-
-
2.8e
ENST00000336890
8e
ENSE00001706218
chr1:
32745442-32745595
154
LCK_HUMAN
348-399
52
0
-
-
2.9b
ENST00000336890
9b
ENSE00001805246
chr1:
32745680-32745811
132
LCK_HUMAN
399-443
45
0
-
-
2.10d
ENST00000336890
10d
ENSE00001348148
chr1:
32751115-32751766
652
LCK_HUMAN
443-509
67
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1q69a_ (A:)
2a: SCOP_d1q69b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Peptides
(792)
Fold
:
CD4 and CD8 receptor regions
(3)
Superfamily
:
CD4 and CD8 receptor regions
(3)
Family
:
CD4 and CD8 receptor regions
(3)
Protein domain
:
T-cell surface glycoprotein CD8 alpha chain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1q69a_
A:
Fold
:
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
(2)
Superfamily
:
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
(2)
Family
:
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
(2)
Protein domain
:
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1q69b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (133 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1Q69
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
