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1Q51
Asym. Unit
Info
Asym.Unit (550 KB)
Biol.Unit 1 (273 KB)
Biol.Unit 2 (272 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MENB IN COMPLEX WITH ACETOACETYL-COENZYME A, A KEY ENZYME IN VITAMIN K2 BIOSYNTHESIS
Authors
:
J. J. Truglio, K. Theis, Y. Feng, R. Gajda, C. Machutta, P. J. Tonge, C. Ki Structural Genomics Consortium (Tbsgc)
Date
:
05 Aug 03 (Deposition) - 27 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Lyase, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Truglio, K. Theis, Y. Feng, R. Gajda, C. Machutta, P. J. Tonge, C. Kisker
Crystal Structure Of Mycobacterium Tuberculosis Menb, A Key Enzyme In Vitamin K2 Biosynthesis.
J. Biol. Chem. V. 278 42352 2003
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: ACETOACETYL-COENZYME A (CAAa)
1b: ACETOACETYL-COENZYME A (CAAb)
1c: ACETOACETYL-COENZYME A (CAAc)
1d: ACETOACETYL-COENZYME A (CAAd)
1e: ACETOACETYL-COENZYME A (CAAe)
1f: ACETOACETYL-COENZYME A (CAAf)
1g: ACETOACETYL-COENZYME A (CAAg)
1h: ACETOACETYL-COENZYME A (CAAh)
1i: ACETOACETYL-COENZYME A (CAAi)
1j: ACETOACETYL-COENZYME A (CAAj)
1k: ACETOACETYL-COENZYME A (CAAk)
1l: ACETOACETYL-COENZYME A (CAAl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAA
12
Ligand/Ion
ACETOACETYL-COENZYME A
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE I:299 , LYS I:302 , VAL K:57 , ARG K:58 , ALA K:60 , PHE K:61 , LYS K:95 , SER K:103 , GLY K:104 , GLY K:105 , ASP K:106 , GLN K:107 , TRP K:157 , GLY K:160 , GLY K:161 , THR K:184 , VAL K:188
BINDING SITE FOR RESIDUE CAA K 500
02
AC2
SOFTWARE
VAL A:57 , ARG A:58 , PHE A:61 , LYS A:95 , SER A:103 , GLY A:104 , GLY A:105 , ASP A:106 , GLN A:107 , TRP A:157 , GLY A:160 , GLY A:161 , THR A:184 , VAL A:188 , PHE D:299 , LYS D:302
BINDING SITE FOR RESIDUE CAA A 501
03
AC3
SOFTWARE
VAL B:57 , ARG B:58 , ALA B:60 , PHE B:61 , LYS B:95 , SER B:103 , GLY B:104 , GLY B:105 , ASP B:106 , GLN B:107 , TRP B:157 , GLY B:160 , GLY B:161 , THR B:184 , VAL B:188 , PHE F:299
BINDING SITE FOR RESIDUE CAA B 502
04
AC4
SOFTWARE
VAL C:57 , ARG C:58 , ALA C:60 , PHE C:61 , LYS C:95 , SER C:103 , GLY C:104 , GLY C:105 , ASP C:106 , GLN C:107 , TRP C:157 , GLY C:160 , GLY C:161 , THR C:184 , VAL C:188 , PHE E:299
BINDING SITE FOR RESIDUE CAA C 503
05
AC5
SOFTWARE
PHE A:299 , VAL D:57 , ARG D:58 , ALA D:60 , PHE D:61 , LYS D:95 , SER D:103 , GLY D:104 , GLY D:105 , ASP D:106 , GLN D:107 , TRP D:157 , GLY D:160 , GLY D:161 , THR D:184
BINDING SITE FOR RESIDUE CAA D 504
06
AC6
SOFTWARE
VAL E:57 , ARG E:58 , ALA E:60 , PHE E:61 , LYS E:95 , SER E:103 , GLY E:104 , GLY E:105 , ASP E:106 , GLN E:107 , TRP E:157 , GLY E:160 , GLY E:161 , THR E:184
BINDING SITE FOR RESIDUE CAA E 505
07
AC7
SOFTWARE
VAL F:57 , ARG F:58 , ALA F:60 , PHE F:61 , LYS F:95 , SER F:103 , GLY F:104 , GLY F:105 , ASP F:106 , GLN F:107 , TRP F:157 , GLY F:160 , GLY F:161 , THR F:184
BINDING SITE FOR RESIDUE CAA F 506
08
AC8
SOFTWARE
GLU G:56 , VAL G:57 , ARG G:58 , ALA G:60 , PHE G:61 , LYS G:95 , SER G:103 , GLY G:104 , GLY G:105 , ASP G:106 , GLN G:107 , TRP G:157 , GLY G:160 , GLY G:161 , THR G:184
BINDING SITE FOR RESIDUE CAA G 507
09
AC9
SOFTWARE
GLU H:56 , VAL H:57 , ARG H:58 , ALA H:60 , PHE H:61 , LYS H:95 , SER H:103 , GLY H:104 , GLY H:105 , ASP H:106 , GLN H:107 , TRP H:157 , GLY H:160 , GLY H:161 , THR H:184 , VAL H:188
BINDING SITE FOR RESIDUE CAA H 508
10
BC1
SOFTWARE
VAL I:57 , ARG I:58 , ALA I:60 , PHE I:61 , LYS I:95 , SER I:103 , GLY I:104 , GLY I:105 , ASP I:106 , GLN I:107 , TRP I:157 , GLY I:160 , GLY I:161 , THR I:184 , VAL I:188
BINDING SITE FOR RESIDUE CAA I 509
11
BC2
SOFTWARE
PHE G:299 , LYS G:302 , VAL J:57 , ARG J:58 , ALA J:60 , LYS J:95 , SER J:103 , GLY J:104 , GLY J:105 , ASP J:106 , GLN J:107 , TRP J:157 , GLY J:160 , GLY J:161 , THR J:184
BINDING SITE FOR RESIDUE CAA J 510
12
BC3
SOFTWARE
PHE H:299 , LYS H:302 , VAL L:57 , ARG L:58 , ALA L:60 , PHE L:61 , LYS L:95 , SER L:103 , GLY L:104 , GLY L:105 , ASP L:106 , GLN L:107 , TRP L:157 , GLY L:160 , GLY L:161 , THR L:184 , VAL L:188
BINDING SITE FOR RESIDUE CAA L 511
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1q51a_ (A:)
1b: SCOP_d1q51b_ (B:)
1c: SCOP_d1q51c_ (C:)
1d: SCOP_d1q51d_ (D:)
1e: SCOP_d1q51e_ (E:)
1f: SCOP_d1q51f_ (F:)
1g: SCOP_d1q51g_ (G:)
1h: SCOP_d1q51h_ (H:)
1i: SCOP_d1q51i_ (I:)
1j: SCOP_d1q51j_ (J:)
1k: SCOP_d1q51k_ (K:)
1l: SCOP_d1q51l_ (L:)
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)
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Naphthoate synthase MenB
(4)
Mycobacterium tuberculosis [TaxId: 1773]
(4)
1a
d1q51a_
A:
1b
d1q51b_
B:
1c
d1q51c_
C:
1d
d1q51d_
D:
1e
d1q51e_
E:
1f
d1q51f_
F:
1g
d1q51g_
G:
1h
d1q51h_
H:
1i
d1q51i_
I:
1j
d1q51j_
J:
1k
d1q51k_
K:
1l
d1q51l_
L:
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_1q51B01 (B:21-251)
1b: CATH_1q51A01 (A:21-251)
1c: CATH_1q51K01 (K:21-251)
1d: CATH_1q51L01 (L:21-251)
1e: CATH_1q51C01 (C:21-251)
1f: CATH_1q51D01 (D:21-251)
1g: CATH_1q51E01 (E:21-251)
1h: CATH_1q51F01 (F:21-251)
1i: CATH_1q51G01 (G:21-251)
1j: CATH_1q51H01 (H:21-251)
1k: CATH_1q51I01 (I:21-251)
1l: CATH_1q51J01 (J:21-251)
2a: CATH_1q51A02 (A:252-302)
2b: CATH_1q51B02 (B:252-302)
2c: CATH_1q51K02 (K:252-302)
2d: CATH_1q51L02 (L:252-302)
2e: CATH_1q51C02 (C:252-302)
2f: CATH_1q51D02 (D:252-302)
2g: CATH_1q51E02 (E:252-302)
2h: CATH_1q51F02 (F:252-302)
2i: CATH_1q51G02 (G:252-302)
2j: CATH_1q51H02 (H:252-302)
2k: CATH_1q51I02 (I:252-302)
2l: CATH_1q51J02 (J:252-302)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Mycobacterium tuberculosis h37rv. Organism_taxid: 83332. Strain: h37rv.
(1)
1a
1q51B01
B:21-251
1b
1q51A01
A:21-251
1c
1q51K01
K:21-251
1d
1q51L01
L:21-251
1e
1q51C01
C:21-251
1f
1q51D01
D:21-251
1g
1q51E01
E:21-251
1h
1q51F01
F:21-251
1i
1q51G01
G:21-251
1j
1q51H01
H:21-251
1k
1q51I01
I:21-251
1l
1q51J01
J:21-251
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Mycobacterium tuberculosis h37rv. Organism_taxid: 83332. Strain: h37rv.
(1)
2a
1q51A02
A:252-302
2b
1q51B02
B:252-302
2c
1q51K02
K:252-302
2d
1q51L02
L:252-302
2e
1q51C02
C:252-302
2f
1q51D02
D:252-302
2g
1q51E02
E:252-302
2h
1q51F02
F:252-302
2i
1q51G02
G:252-302
2j
1q51H02
H:252-302
2k
1q51I02
I:252-302
2l
1q51J02
J:252-302
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_ECH_1q51L01 (L:40-302)
1b: PFAM_ECH_1q51L02 (L:40-302)
1c: PFAM_ECH_1q51L03 (L:40-302)
1d: PFAM_ECH_1q51L04 (L:40-302)
1e: PFAM_ECH_1q51L05 (L:40-302)
1f: PFAM_ECH_1q51L06 (L:40-302)
1g: PFAM_ECH_1q51L07 (L:40-302)
1h: PFAM_ECH_1q51L08 (L:40-302)
1i: PFAM_ECH_1q51L09 (L:40-302)
1j: PFAM_ECH_1q51L10 (L:40-302)
1k: PFAM_ECH_1q51L11 (L:40-302)
1l: PFAM_ECH_1q51L12 (L:40-302)
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)
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(
)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Mycobacterium tuberculosis
(4)
1a
ECH-1q51L01
L:40-302
1b
ECH-1q51L02
L:40-302
1c
ECH-1q51L03
L:40-302
1d
ECH-1q51L04
L:40-302
1e
ECH-1q51L05
L:40-302
1f
ECH-1q51L06
L:40-302
1g
ECH-1q51L07
L:40-302
1h
ECH-1q51L08
L:40-302
1i
ECH-1q51L09
L:40-302
1j
ECH-1q51L10
L:40-302
1k
ECH-1q51L11
L:40-302
1l
ECH-1q51L12
L:40-302
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Asym.Unit (550 KB)
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