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1Q4K
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (39 KB)
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(1)
Title
:
THE POLO-BOX DOMAIN OF PLK1 IN COMPLEX WITH A PHOSPHO-PEPTIDE
Authors
:
K. Cheng, E. D. Lowe, J. Sinclair, E. A. Nigg, L. N. Johnson
Date
:
04 Aug 03 (Deposition) - 11 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: B,E (1x)
Biol. Unit 2: A,D (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Six-Stranded Anti-Parallel Beta Sheet With One Alpha Helix, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Y. Cheng, E. D. Lowe, J. Sinclair, E. A. Nigg, L. N. Johnson
The Crystal Structure Of The Human Polo-Like Kinase-1 Polo Box Domain And Its Phospho-Peptide Complex.
Embo J. V. 22 5757 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PHOSPHOTHREONINE (TPOa)
1b: PHOSPHOTHREONINE (TPOb)
1c: PHOSPHOTHREONINE (TPOc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TPO
3
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(2, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041021 (L463H, chain A/B/C, )
2: VAR_041022 (R518H, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041021
L
463
H
PLK1_HUMAN
Polymorphism
45569335
A/B/C
L
463
H
2
UniProt
VAR_041022
R
518
H
PLK1_HUMAN
Polymorphism
56027600
A/B/C
R
518
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: POLO_BOX (A:417-480,B:417-480,C:417-480|A:51...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLO_BOX
PS50078
POLO box domain profile.
PLK1_HUMAN
417-480
515-584
6
A:417-480
B:417-480
C:417-480
A:515-584
B:515-584
C:515-584
[
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Exons
(5, 15)
Info
All Exons
Exon 1.6 (A:372-398 | B:371-398 | C:372-398)
Exon 1.7 (A:398-424 | B:398-424 | C:398-424)
Exon 1.8 (A:424-475 | B:424-475 | C:424-475)
Exon 1.9 (A:476-536 | B:476-536 | C:476-536 ...)
Exon 1.10a (A:537-593 | B:537-594 | C:537-593)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10a
6: Boundary 1.10a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300093
1a
ENSE00001107240
chr16:
23690143-23690661
519
PLK1_HUMAN
1-136
136
0
-
-
1.2b
ENST00000300093
2b
ENSE00001107217
chr16:
23691405-23691573
169
PLK1_HUMAN
137-193
57
0
-
-
1.3b
ENST00000300093
3b
ENSE00001107239
chr16:
23692235-23692379
145
PLK1_HUMAN
193-241
49
0
-
-
1.4
ENST00000300093
4
ENSE00001107237
chr16:
23693385-23693478
94
PLK1_HUMAN
241-272
32
0
-
-
1.5
ENST00000300093
5
ENSE00001107229
chr16:
23695191-23695410
220
PLK1_HUMAN
273-346
74
0
-
-
1.6
ENST00000300093
6
ENSE00001107234
chr16:
23698790-23698945
156
PLK1_HUMAN
346-398
53
3
A:372-398
B:371-398
C:372-398
27
28
27
1.7
ENST00000300093
7
ENSE00001107238
chr16:
23699989-23700066
78
PLK1_HUMAN
398-424
27
3
A:398-424
B:398-424
C:398-424
27
27
27
1.8
ENST00000300093
8
ENSE00001107241
chr16:
23700559-23700713
155
PLK1_HUMAN
424-475
52
3
A:424-475
B:424-475
C:424-475
52
52
52
1.9
ENST00000300093
9
ENSE00001107222
chr16:
23700815-23700997
183
PLK1_HUMAN
476-536
61
3
A:476-536
B:476-536
C:476-536 (gaps)
61
61
61
1.10a
ENST00000300093
10a
ENSE00001107226
chr16:
23701181-23701688
508
PLK1_HUMAN
537-603
67
3
A:537-593
B:537-594
C:537-593
57
58
57
[
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]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1q4ka1 (A:372-500)
1b: SCOP_d1q4ka2 (A:501-593)
1c: SCOP_d1q4kb1 (B:371-500)
1d: SCOP_d1q4kb2 (B:501-594)
1e: SCOP_d1q4kc1 (C:372-494)
1f: SCOP_d1q4kc2 (C:503-593)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Polo-box domain
(18)
Superfamily
:
Polo-box domain
(18)
Family
:
Polo-box duplicated region
(17)
Protein domain
:
Serine/threonine-protein kinase plk C-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1q4ka1
A:372-500
1b
d1q4ka2
A:501-593
1c
d1q4kb1
B:371-500
1d
d1q4kb2
B:501-594
1e
d1q4kc1
C:372-494
1f
d1q4kc2
C:503-593
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1q4kA02 (A:412-508)
1b: CATH_1q4kC02 (C:412-508)
1c: CATH_1q4kB01 (B:371-411,B:509-594)
1d: CATH_1q4kA01 (A:372-411,A:509-593)
1e: CATH_1q4kC01 (C:372-411,C:509-593)
1f: CATH_1q4kB02 (B:412-508)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Arylsulfatase, C-terminal domain
(26)
Homologous Superfamily
:
Polo-box like domain
(10)
Human (Homo sapiens)
(10)
1a
1q4kA02
A:412-508
1b
1q4kC02
C:412-508
1c
1q4kB01
B:371-411,B:509-594
1d
1q4kA01
A:372-411,A:509-593
1e
1q4kC01
C:372-411,C:509-593
1f
1q4kB02
B:412-508
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_POLO_box_1q4kC01 (C:515-584)
1b: PFAM_POLO_box_1q4kC02 (C:515-584)
1c: PFAM_POLO_box_1q4kC03 (C:515-584)
1d: PFAM_POLO_box_1q4kC04 (C:515-584)
1e: PFAM_POLO_box_1q4kC05 (C:515-584)
1f: PFAM_POLO_box_1q4kC06 (C:515-584)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: POLO_box]
(13)
Family
:
POLO_box
(13)
Homo sapiens (Human)
(12)
1a
POLO_box-1q4kC01
C:515-584
1b
POLO_box-1q4kC02
C:515-584
1c
POLO_box-1q4kC03
C:515-584
1d
POLO_box-1q4kC04
C:515-584
1e
POLO_box-1q4kC05
C:515-584
1f
POLO_box-1q4kC06
C:515-584
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