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1Q3K
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (257 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CREATININE AMIDOHYDROLASE (CREATININASE)
Authors
:
B. Beuth, K. Niefind, D. Schomburg
Date
:
30 Jul 03 (Deposition) - 12 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Beta-Fold, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Beuth, K. Niefind, D. Schomburg
Crystal Structure Of Creatininase From Pseudomonas Putida: Novel Fold And A Case Of Convergent Evolution
J. Mol. Biol. V. 332 287 2003
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:34 , ASP A:45 , HIS A:120 , ZN A:301 , HOH A:903 , HOH A:904 , HOH A:905
BINDING SITE FOR RESIDUE ZN A 300
02
AC2
SOFTWARE
HIS A:36 , ASP A:45 , GLU A:183 , ZN A:300 , HOH A:903
BINDING SITE FOR RESIDUE ZN A 301
03
AC3
SOFTWARE
GLU B:34 , ASP B:45 , HIS B:120 , ZN B:301 , HOH B:902 , HOH B:903 , HOH B:904
BINDING SITE FOR RESIDUE ZN B 300
04
AC4
SOFTWARE
HIS B:36 , ASP B:45 , GLU B:183 , ZN B:300 , HOH B:902 , HOH B:905
BINDING SITE FOR RESIDUE ZN B 301
05
AC5
SOFTWARE
GLU C:34 , ASP C:45 , HIS C:120 , ZN C:301 , HOH C:905 , HOH C:906 , HOH C:907
BINDING SITE FOR RESIDUE ZN C 300
06
AC6
SOFTWARE
HIS C:36 , ASP C:45 , GLU C:183 , ZN C:300 , HOH C:905 , HOH C:908
BINDING SITE FOR RESIDUE ZN C 301
07
AC7
SOFTWARE
GLU D:34 , ASP D:45 , HIS D:120 , ZN D:301 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE ZN D 300
08
AC8
SOFTWARE
HIS D:36 , ASP D:45 , GLU D:183 , ZN D:300 , HOH D:302
BINDING SITE FOR RESIDUE ZN D 301
09
AC9
SOFTWARE
GLU E:34 , ASP E:45 , HIS E:120 , ZN E:301 , HOH E:905 , HOH E:907
BINDING SITE FOR RESIDUE ZN E 300
10
BC1
SOFTWARE
HIS E:36 , ASP E:45 , GLU E:183 , ZN E:300 , HOH E:904 , HOH E:906
BINDING SITE FOR RESIDUE ZN E 301
11
BC2
SOFTWARE
GLU F:34 , ASP F:45 , HIS F:120 , ZN F:301 , HOH F:302 , HOH F:303
BINDING SITE FOR RESIDUE ZN F 300
12
BC3
SOFTWARE
HIS F:36 , ASP F:45 , GLU F:183 , ZN F:300 , HOH F:302 , HOH F:304
BINDING SITE FOR RESIDUE ZN F 301
13
BC4
SOFTWARE
VAL B:19 , GLY B:22 , ASP B:23 , CYS B:24 , GLY B:110 , ARG B:112 , ARG B:113
BINDING SITE FOR RESIDUE GOL B 901
14
BC5
SOFTWARE
LEU A:68 , GLN A:69 , TYR A:70 , GLN B:69 , TYR B:70 , THR B:98 , HOH B:982
BINDING SITE FOR RESIDUE GOL A 902
15
BC6
SOFTWARE
LEU E:68 , GLN E:69 , TYR E:70 , HOH E:911 , HOH E:1005 , LEU F:68 , GLN F:69 , TYR F:70
BINDING SITE FOR RESIDUE GOL E 903
16
BC7
SOFTWARE
LEU C:68 , GLN C:69 , TYR C:70 , HOH C:913 , GLN D:69 , TYR D:70 , THR D:98
BINDING SITE FOR RESIDUE GOL C 904
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1q3ka_ (A:)
1b: SCOP_d1q3kb_ (B:)
1c: SCOP_d1q3kc_ (C:)
1d: SCOP_d1q3kd_ (D:)
1e: SCOP_d1q3ke_ (E:)
1f: SCOP_d1q3kf_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Creatininase
(13)
Superfamily
:
Creatininase
(13)
Family
:
Creatininase
(13)
Protein domain
:
Creatininase
(12)
Pseudomonas putida [TaxId: 303]
(12)
1a
d1q3ka_
A:
1b
d1q3kb_
B:
1c
d1q3kc_
C:
1d
d1q3kd_
D:
1e
d1q3ke_
E:
1f
d1q3kf_
F:
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1q3kA00 (A:2-260)
1b: CATH_1q3kB00 (B:2-260)
1c: CATH_1q3kC00 (C:2-260)
1d: CATH_1q3kD00 (D:2-260)
1e: CATH_1q3kE00 (E:2-260)
1f: CATH_1q3kF00 (F:2-260)
View:
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Creatininase
(12)
Pseudomonas putida. Organism_taxid: 303.
(11)
1a
1q3kA00
A:2-260
1b
1q3kB00
B:2-260
1c
1q3kC00
C:2-260
1d
1q3kD00
D:2-260
1e
1q3kE00
E:2-260
1f
1q3kF00
F:2-260
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (264 KB)
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