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1Q3G
Biol. Unit 3
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (278 KB)
Biol.Unit 2 (279 KB)
Biol.Unit 3 (276 KB)
Biol.Unit 4 (274 KB)
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(1)
Title
:
MURA (ASP305ALA) LIGANDED WITH TETRAHEDRAL REACTION INTERMEDIATE
Authors
:
S. Eschenburg, W. Kabsch, M. L. Healy, E. Schonbrunn
Date
:
29 Jul 03 (Deposition) - 16 Dec 03 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,W,X,Y,Z
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: W,X,Y,Z (1x)
Keywords
:
Inside-Out Alpha-Beta Barrel, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eschenburg, W. Kabsch, M. L. Healy, E. Schonbrunn
A New View Of The Mechanisms Of Udp-N-Acetylglucosamine Enolpyruvyl Transferase (Mura) And 5-Enolpyruvylshikimate-3-Phosphate Synthase (Aroa) Derived From X-Ray Structures Of Their Tetrahedral Reaction Intermediate States.
J. Biol. Chem. V. 278 49215 2003
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: BETA-L-ASPARTIC ACID (IASa)
2b: BETA-L-ASPARTIC ACID (IASb)
2c: BETA-L-ASPARTIC ACID (IASc)
2d: BETA-L-ASPARTIC ACID (IASd)
2e: BETA-L-ASPARTIC ACID (IASe)
2f: BETA-L-ASPARTIC ACID (IASf)
2g: BETA-L-ASPARTIC ACID (IASg)
2h: BETA-L-ASPARTIC ACID (IASh)
2i: BETA-L-ASPARTIC ACID (IASi)
2j: BETA-L-ASPARTIC ACID (IASj)
2k: BETA-L-ASPARTIC ACID (IASk)
2l: BETA-L-ASPARTIC ACID (IASl)
2m: BETA-L-ASPARTIC ACID (IASm)
2n: BETA-L-ASPARTIC ACID (IASn)
2o: BETA-L-ASPARTIC ACID (IASo)
2p: BETA-L-ASPARTIC ACID (IASp)
3a: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAa)
3b: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAb)
3c: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAc)
3d: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAd)
3e: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAe)
3f: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAf)
3g: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAg)
3h: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAh)
3i: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAi)
3j: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAj)
3k: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAk)
3l: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAl)
3m: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAm)
3n: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAn)
3o: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAo)
3p: 3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY... (UDAp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
IAS
4
Mod. Amino Acid
BETA-L-ASPARTIC ACID
3
UDA
4
Ligand/Ion
3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY-URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: CC7 (SOFTWARE)
6: CC8 (SOFTWARE)
7: CC9 (SOFTWARE)
8: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
LYS I:22 , ASN I:23 , TRP I:95 , ARG I:120 , PRO I:121 , VAL I:122 , ASP I:123 , LEU I:124 , HIS I:125 , LYS I:160 , SER I:162 , VAL I:163 , GLY I:164 , THR I:304 , ALA I:305 , ILE I:327 , PHE I:328 , ARG I:331 , LEU I:370 , ARG I:371 , ARG I:397 , HOH I:420 , HOH I:424 , HOH I:434 , HOH I:441 , HOH I:518 , EDO I:1478
BINDING SITE FOR RESIDUE UDA I 1458
2
BC1
SOFTWARE
LYS J:22 , ASN J:23 , TRP J:95 , ARG J:120 , PRO J:121 , VAL J:122 , ASP J:123 , LEU J:124 , HIS J:125 , LYS J:160 , SER J:162 , VAL J:163 , GLY J:164 , THR J:304 , ALA J:305 , ILE J:327 , PHE J:328 , ARG J:331 , LEU J:370 , ARG J:371 , ARG J:397 , HOH J:422 , HOH J:426 , HOH J:616 , HOH J:840 , EDO J:1479
BINDING SITE FOR RESIDUE UDA J 1459
3
BC2
SOFTWARE
LYS K:22 , ASN K:23 , TRP K:95 , ARG K:120 , PRO K:121 , VAL K:122 , ASP K:123 , LEU K:124 , HIS K:125 , LYS K:160 , SER K:162 , VAL K:163 , GLY K:164 , THR K:304 , ALA K:305 , ILE K:327 , PHE K:328 , ARG K:331 , LEU K:370 , ARG K:371 , HOH K:424 , HOH K:428 , HOH K:429 , HOH K:435 , HOH K:437 , HOH K:439 , HOH K:740 , HOH K:1309 , EDO K:1480
BINDING SITE FOR RESIDUE UDA K 1460
4
BC3
SOFTWARE
LYS L:22 , ASN L:23 , TRP L:95 , ARG L:120 , PRO L:121 , VAL L:122 , ASP L:123 , LEU L:124 , HIS L:125 , LYS L:160 , SER L:162 , VAL L:163 , GLY L:164 , GLU L:188 , THR L:304 , ALA L:305 , ILE L:327 , PHE L:328 , ARG L:331 , LEU L:370 , ARG L:371 , ARG L:397 , HOH L:583 , HOH L:831 , HOH L:851 , HOH L:1023 , HOH L:1276 , EDO L:1481
BINDING SITE FOR RESIDUE UDA L 1461
5
CC7
SOFTWARE
ARG I:91 , ARG I:120 , GLY I:164 , UDA I:1458
BINDING SITE FOR RESIDUE EDO I 1478
6
CC8
SOFTWARE
GLY J:164 , HOH J:426 , UDA J:1459
BINDING SITE FOR RESIDUE EDO J 1479
7
CC9
SOFTWARE
ARG K:91 , TRP K:95 , ARG K:120 , GLY K:164 , HOH K:429 , UDA K:1460
BINDING SITE FOR RESIDUE EDO K 1480
8
DC1
SOFTWARE
ARG L:91 , GLY L:164 , UDA L:1461
BINDING SITE FOR RESIDUE EDO L 1481
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1q3ga_ (A:)
1b: SCOP_d1q3gb_ (B:)
1c: SCOP_d1q3gc_ (C:)
1d: SCOP_d1q3gd_ (D:)
1e: SCOP_d1q3ge_ (E:)
1f: SCOP_d1q3gf_ (F:)
1g: SCOP_d1q3gg_ (G:)
1h: SCOP_d1q3gh_ (H:)
1i: SCOP_d1q3gi_ (I:)
1j: SCOP_d1q3gj_ (J:)
1k: SCOP_d1q3gk_ (K:)
1l: SCOP_d1q3gl_ (L:)
1m: SCOP_d1q3gw_ (W:)
1n: SCOP_d1q3gx_ (X:)
1o: SCOP_d1q3gy_ (Y:)
1p: SCOP_d1q3gz_ (Z:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)
(27)
Enterobacter cloacae [TaxId: 550]
(12)
1a
d1q3ga_
A:
1b
d1q3gb_
B:
1c
d1q3gc_
C:
1d
d1q3gd_
D:
1e
d1q3ge_
E:
1f
d1q3gf_
F:
1g
d1q3gg_
G:
1h
d1q3gh_
H:
1i
d1q3gi_
I:
1j
d1q3gj_
J:
1k
d1q3gk_
K:
1l
d1q3gl_
L:
1m
d1q3gw_
W:
1n
d1q3gx_
X:
1o
d1q3gy_
Y:
1p
d1q3gz_
Z:
[
close SCOP info
]
CATH Domains
(1, 32)
Info
all CATH domains
1a: CATH_1q3gA01 (A:1-18,A:230-418)
1b: CATH_1q3gB01 (B:1-18,B:230-418)
1c: CATH_1q3gC01 (C:1-18,C:230-418)
1d: CATH_1q3gD01 (D:1-18,D:230-418)
1e: CATH_1q3gE01 (E:1-18,E:230-418)
1f: CATH_1q3gF01 (F:1-18,F:230-418)
1g: CATH_1q3gG01 (G:1-18,G:230-418)
1h: CATH_1q3gH01 (H:1-18,H:230-418)
1i: CATH_1q3gI01 (I:1-18,I:230-418)
1j: CATH_1q3gJ01 (J:1-18,J:230-418)
1k: CATH_1q3gK01 (K:1-18,K:230-418)
1l: CATH_1q3gL01 (L:1-18,L:230-418)
1m: CATH_1q3gW01 (W:1-18,W:230-418)
1n: CATH_1q3gX01 (X:1-18,X:230-418)
1o: CATH_1q3gY01 (Y:1-18,Y:230-418)
1p: CATH_1q3gZ01 (Z:1-18,Z:230-418)
1q: CATH_1q3gA02 (A:21-228)
1r: CATH_1q3gB02 (B:21-228)
1s: CATH_1q3gC02 (C:21-228)
1t: CATH_1q3gD02 (D:21-228)
1u: CATH_1q3gE02 (E:21-228)
1v: CATH_1q3gF02 (F:21-228)
1w: CATH_1q3gG02 (G:21-228)
1x: CATH_1q3gH02 (H:21-228)
1y: CATH_1q3gI02 (I:21-228)
1z: CATH_1q3gJ02 (J:21-228)
1aa: CATH_1q3gK02 (K:21-228)
1ab: CATH_1q3gL02 (L:21-228)
1ac: CATH_1q3gW02 (W:21-228)
1ad: CATH_1q3gX02 (X:21-228)
1ae: CATH_1q3gY02 (Y:21-228)
1af: CATH_1q3gZ02 (Z:21-228)
View:
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(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Enterobacter cloacae. Organism_taxid: 550.
(4)
1a
1q3gA01
A:1-18,A:230-418
1b
1q3gB01
B:1-18,B:230-418
1c
1q3gC01
C:1-18,C:230-418
1d
1q3gD01
D:1-18,D:230-418
1e
1q3gE01
E:1-18,E:230-418
1f
1q3gF01
F:1-18,F:230-418
1g
1q3gG01
G:1-18,G:230-418
1h
1q3gH01
H:1-18,H:230-418
1i
1q3gI01
I:1-18,I:230-418
1j
1q3gJ01
J:1-18,J:230-418
1k
1q3gK01
K:1-18,K:230-418
1l
1q3gL01
L:1-18,L:230-418
1m
1q3gW01
W:1-18,W:230-418
1n
1q3gX01
X:1-18,X:230-418
1o
1q3gY01
Y:1-18,Y:230-418
1p
1q3gZ01
Z:1-18,Z:230-418
1q
1q3gA02
A:21-228
1r
1q3gB02
B:21-228
1s
1q3gC02
C:21-228
1t
1q3gD02
D:21-228
1u
1q3gE02
E:21-228
1v
1q3gF02
F:21-228
1w
1q3gG02
G:21-228
1x
1q3gH02
H:21-228
1y
1q3gI02
I:21-228
1z
1q3gJ02
J:21-228
1aa
1q3gK02
K:21-228
1ab
1q3gL02
L:21-228
1ac
1q3gW02
W:21-228
1ad
1q3gX02
X:21-228
1ae
1q3gY02
Y:21-228
1af
1q3gZ02
Z:21-228
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_1q3gZ01 (Z:6-406)
1b: PFAM_EPSP_synthase_1q3gZ02 (Z:6-406)
1c: PFAM_EPSP_synthase_1q3gZ03 (Z:6-406)
1d: PFAM_EPSP_synthase_1q3gZ04 (Z:6-406)
1e: PFAM_EPSP_synthase_1q3gZ05 (Z:6-406)
1f: PFAM_EPSP_synthase_1q3gZ06 (Z:6-406)
1g: PFAM_EPSP_synthase_1q3gZ07 (Z:6-406)
1h: PFAM_EPSP_synthase_1q3gZ08 (Z:6-406)
1i: PFAM_EPSP_synthase_1q3gZ09 (Z:6-406)
1j: PFAM_EPSP_synthase_1q3gZ10 (Z:6-406)
1k: PFAM_EPSP_synthase_1q3gZ11 (Z:6-406)
1l: PFAM_EPSP_synthase_1q3gZ12 (Z:6-406)
1m: PFAM_EPSP_synthase_1q3gZ13 (Z:6-406)
1n: PFAM_EPSP_synthase_1q3gZ14 (Z:6-406)
1o: PFAM_EPSP_synthase_1q3gZ15 (Z:6-406)
1p: PFAM_EPSP_synthase_1q3gZ16 (Z:6-406)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56)
(6)
1a
EPSP_synthase-1q3gZ01
Z:6-406
1b
EPSP_synthase-1q3gZ02
Z:6-406
1c
EPSP_synthase-1q3gZ03
Z:6-406
1d
EPSP_synthase-1q3gZ04
Z:6-406
1e
EPSP_synthase-1q3gZ05
Z:6-406
1f
EPSP_synthase-1q3gZ06
Z:6-406
1g
EPSP_synthase-1q3gZ07
Z:6-406
1h
EPSP_synthase-1q3gZ08
Z:6-406
1i
EPSP_synthase-1q3gZ09
Z:6-406
1j
EPSP_synthase-1q3gZ10
Z:6-406
1k
EPSP_synthase-1q3gZ11
Z:6-406
1l
EPSP_synthase-1q3gZ12
Z:6-406
1m
EPSP_synthase-1q3gZ13
Z:6-406
1n
EPSP_synthase-1q3gZ14
Z:6-406
1o
EPSP_synthase-1q3gZ15
Z:6-406
1p
EPSP_synthase-1q3gZ16
Z:6-406
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