PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1Q3E
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (136 KB)
Biol.Unit 3 (270 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HCN2J 443-645 IN THE PRESENCE OF CGMP
Authors
:
W. N. Zagotta, N. B. Olivier, K. D. Black, E. C. Young, R. Olson, J. E. Goua
Date
:
29 Jul 03 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Biol. Unit 3: A,B (4x)
Keywords
:
Cnbd, C-Linker, Pacemaker, Hcn, Channel, Cyclic Nucleotide, Cap, Pka, Cgmp, Ion Channel, Ligand, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. N. Zagotta, N. B. Olivier, K. D. Black, E. C. Young, R. Olson, J. E. Gouaux
Structural Basis For Modulation And Agonist Specificity Of Hcn Pacemaker Channels
Nature V. 425 200 2003
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: CYCLIC GUANOSINE MONOPHOSPHATE (PCGa)
1b: CYCLIC GUANOSINE MONOPHOSPHATE (PCGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PCG
2
Ligand/Ion
CYCLIC GUANOSINE MONOPHOSPHATE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:171 , HOH A:187 , HOH A:250 , HOH A:288 , THR A:566 , MET A:572 , PHE A:580 , GLY A:581 , GLU A:582 , ILE A:583 , CYS A:584 , ARG A:591 , THR A:592 , ALA A:593 , ARG A:632
BINDING SITE FOR RESIDUE PCG A 401
2
AC2
SOFTWARE
HOH B:111 , HOH B:290 , VAL B:564 , MET B:572 , PHE B:580 , GLY B:581 , GLU B:582 , ILE B:583 , CYS B:584 , ARG B:591 , THR B:592 , ALA B:593 , ARG B:632
BINDING SITE FOR RESIDUE PCG B 402
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:517-623,B:517-623)
2: CNMP_BINDING_1 (A:544-560,B:544-560)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
HCN2_MOUSE
517-623
2
A:517-623
B:517-623
2
CNMP_BINDING_1
PS00888
Cyclic nucleotide-binding domain signature 1.
HCN2_MOUSE
544-560
2
A:544-560
B:544-560
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.4 (A:443-452 | B:443-452)
Exon 1.5 (A:453-501 | B:453-501)
Exon 1.6 (A:502-582 (gaps) | B:502-582 (gaps...)
Exon 1.7 (A:582-635 | B:582-635)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000099513
1
ENSMUSE00000332759
chr10:
79179379-79179964
586
HCN2_MOUSE
1-184
184
0
-
-
1.2
ENSMUST00000099513
2
ENSMUSE00000574999
chr10:
79187133-79187556
424
HCN2_MOUSE
184-325
142
0
-
-
1.3
ENSMUST00000099513
3
ENSMUSE00000574998
chr10:
79188892-79189053
162
HCN2_MOUSE
326-379
54
0
-
-
1.4
ENSMUST00000099513
4
ENSMUSE00000574997
chr10:
79191638-79191856
219
HCN2_MOUSE
380-452
73
2
A:443-452
B:443-452
10
10
1.5
ENSMUST00000099513
5
ENSMUSE00000574996
chr10:
79193592-79193738
147
HCN2_MOUSE
453-501
49
2
A:453-501
B:453-501
49
49
1.6
ENSMUST00000099513
6
ENSMUSE00000574995
chr10:
79196416-79196656
241
HCN2_MOUSE
502-582
81
2
A:502-582 (gaps)
B:502-582 (gaps)
81
81
1.7
ENSMUST00000099513
7
ENSMUSE00000574994
chr10:
79196808-79196972
165
HCN2_MOUSE
582-637
56
2
A:582-635
B:582-635
54
54
1.8b
ENSMUST00000099513
8b
ENSMUSE00000642019
chr10:
79197603-79198853
1251
HCN2_MOUSE
637-863
227
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1q3ea_ (A:)
1b: SCOP_d1q3eb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
cAMP-binding domain
(78)
Protein domain
:
HCN pacemaker channel
(5)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d1q3ea_
A:
1b
d1q3eb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1q3eA01 (A:443-508)
1b: CATH_1q3eB01 (B:443-508)
2a: CATH_1q3eA02 (A:509-635)
2b: CATH_1q3eB02 (B:509-635)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(8)
House mouse (Mus musculus)
(5)
1a
1q3eA01
A:443-508
1b
1q3eB01
B:443-508
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
House mouse (Mus musculus)
(6)
2a
1q3eA02
A:509-635
2b
1q3eB02
B:509-635
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_cNMP_binding_1q3eB01 (B:535-620)
1b: PFAM_cNMP_binding_1q3eB02 (B:535-620)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: cNMP_binding]
(41)
Family
:
cNMP_binding
(41)
Mus musculus (Mouse)
(6)
1a
cNMP_binding-1q3eB01
B:535-620
1b
cNMP_binding-1q3eB02
B:535-620
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (74 KB)
Header - Asym.Unit
Biol.Unit 1 (137 KB)
Header - Biol.Unit 1
Biol.Unit 2 (136 KB)
Header - Biol.Unit 2
Biol.Unit 3 (270 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1Q3E
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
