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1Q32
Biol. Unit 3
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Asym.Unit (300 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE YEAST TYROSYL-DNA PHOSPHODIESTERASE
Authors
:
X. He, K. Babaoglu, A. Price, K. C. Nitiss, J. L. Nitiss, S. W. White
Date
:
28 Jul 03 (Deposition) - 07 Sep 04 (Release) - 10 Jun 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Tyrosyl-Dna Phosphodiesterase; Tdp; Dna Repair, Replication, Transcription, Hydrolase, Replication, Transcription, Hydrolase
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Reference
:
X. He, R. C. Van Waardenburg, K. Babaoglu, A. C. Price, K. C. Nitiss, J. L. Nitiss, M. A. Bjornsti, S. W. White
Mutation Of A Conserved Active Site Residue Converts Tyrosyl-Dna Phosphodiesterase I Into A Dna Topoisomerase I-Dependent Poison
J. Mol. Biol. V. 372 1070 2007
(for further references see the
PDB file header
)
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Hetero Components
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Exons
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1q32a1 (A:79-293)
1b: SCOP_d1q32a2 (A:302-538)
1c: SCOP_d1q32b1 (B:79-293)
1d: SCOP_d1q32b2 (B:302-538)
1e: SCOP_d1q32c1 (C:79-293)
1f: SCOP_d1q32c2 (C:302-538)
1g: SCOP_d1q32d1 (D:79-293)
1h: SCOP_d1q32d2 (D:302-538)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Phospholipase D/nuclease
(33)
Superfamily
:
Phospholipase D/nuclease
(33)
Family
:
Tyrosyl-DNA phosphodiesterase TDP1
(17)
Protein domain
:
Tyrosyl-DNA phosphodiesterase TDP1
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1q32a1
A:79-293
1b
d1q32a2
A:302-538
1c
d1q32b1
B:79-293
1d
d1q32b2
B:302-538
1e
d1q32c1
C:79-293
1f
d1q32c2
C:302-538
1g
d1q32d1
D:79-293
1h
d1q32d2
D:302-538
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1q32A01 (A:79-267)
1b: CATH_1q32C01 (C:79-267)
1c: CATH_1q32B01 (B:79-267)
1d: CATH_1q32D01 (D:79-267)
2a: CATH_1q32A02 (A:268-538)
2b: CATH_1q32C02 (C:268-541)
2c: CATH_1q32D02 (D:268-538)
2d: CATH_1q32B02 (B:268-540)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Endonuclease; Chain A
(28)
Homologous Superfamily
:
Endonuclease Chain A
(28)
Baker's yeast (Saccharomyces cerevisiae)
(1)
1a
1q32A01
A:79-267
1b
1q32C01
C:79-267
1c
1q32B01
B:79-267
1d
1q32D01
D:79-267
Homologous Superfamily
:
Phospholipase D/nuclease; domain 2
(13)
Baker's yeast (Saccharomyces cerevisiae)
(1)
2a
1q32A02
A:268-538
2b
1q32C02
C:268-541
2c
1q32D02
D:268-538
2d
1q32B02
B:268-540
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Tyr_DNA_phospho_1q32D01 (D:81-529)
1b: PFAM_Tyr_DNA_phospho_1q32D02 (D:81-529)
1c: PFAM_Tyr_DNA_phospho_1q32D03 (D:81-529)
1d: PFAM_Tyr_DNA_phospho_1q32D04 (D:81-529)
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Clan
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PLD
(22)
Family
:
Tyr-DNA_phospho
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
Tyr-DNA_phospho-1q32D01
D:81-529
1b
Tyr-DNA_phospho-1q32D02
D:81-529
1c
Tyr-DNA_phospho-1q32D03
D:81-529
1d
Tyr-DNA_phospho-1q32D04
D:81-529
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Asymmetric Unit 1
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Asym.Unit (300 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
Biol.Unit 3 (77 KB)
Header - Biol.Unit 3
Biol.Unit 4 (76 KB)
Header - Biol.Unit 4
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