PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1Q2Z
Asym. Unit
Info
Asym.Unit (656 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
THE 3D SOLUTION STRUCTURE OF THE C-TERMINAL REGION OF KU86
Authors
:
R. Harris, D. Esposito, A. Sankar, J. D. Maman, J. A. Hinks, L. H. Pearl, P. C. Driscoll
Date
:
28 Jul 03 (Deposition) - 13 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ku, Dna Repair, Protein Structure, Nmr Spectroscopy, Dna-Pk, Ku86, Ku80, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Harris, D. Esposito, A. Sankar, J. D. Maman, J. A. Hinks, L. H. Pearl, P. C. Driscoll
The 3D Solution Structure Of The C-Terminal Region Of Ku86 (Ku86Ctr)
J. Mol. Biol. V. 335 573 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.19 (A:1-23)
Exon 1.20 (A:23-59)
Exon 1.21 (A:60-92)
Exon 1.22 (A:92-114)
Exon 1.23b (A:115-120)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18/1.19
2: Boundary 1.19/1.20
3: Boundary 1.20/1.21
4: Boundary 1.21/1.22
5: Boundary 1.22/1.23b
6: Boundary 1.23b/1.24e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000392133
1
ENSE00001606905
chr2:
216972187-216972255
69
XRCC5_HUMAN
-
0
0
-
-
1.2
ENST00000392133
2
ENSE00001685529
chr2:
216972376-216972421
46
XRCC5_HUMAN
-
0
0
-
-
1.3a
ENST00000392133
3a
ENSE00001722417
chr2:
216973814-216974180
367
XRCC5_HUMAN
1-7
7
0
-
-
1.5a
ENST00000392133
5a
ENSE00001702382
chr2:
216977739-216977852
114
XRCC5_HUMAN
8-45
38
0
-
-
1.6b
ENST00000392133
6b
ENSE00001074754
chr2:
216981382-216981565
184
XRCC5_HUMAN
46-107
62
0
-
-
1.6g
ENST00000392133
6g
ENSE00001741685
chr2:
216982469-216982517
49
XRCC5_HUMAN
107-123
17
0
-
-
1.7c
ENST00000392133
7c
ENSE00001791529
chr2:
216983766-216983888
123
XRCC5_HUMAN
123-164
42
0
-
-
1.8
ENST00000392133
8
ENSE00001074723
chr2:
216986785-216986976
192
XRCC5_HUMAN
164-228
65
0
-
-
1.9a
ENST00000392133
9a
ENSE00000785536
chr2:
216990640-216990754
115
XRCC5_HUMAN
228-266
39
0
-
-
1.10a
ENST00000392133
10a
ENSE00000785538
chr2:
216992259-216992397
139
XRCC5_HUMAN
267-313
47
0
-
-
1.12
ENST00000392133
12
ENSE00000785539
chr2:
216995598-216995710
113
XRCC5_HUMAN
313-350
38
0
-
-
1.13
ENST00000392133
13
ENSE00000785540
chr2:
216997048-216997110
63
XRCC5_HUMAN
351-371
21
0
-
-
1.14
ENST00000392133
14
ENSE00000417070
chr2:
217001811-217001948
138
XRCC5_HUMAN
372-417
46
0
-
-
1.15
ENST00000392133
15
ENSE00000785542
chr2:
217002812-217002902
91
XRCC5_HUMAN
418-448
31
0
-
-
1.16
ENST00000392133
16
ENSE00000785543
chr2:
217005909-217006042
134
XRCC5_HUMAN
448-492
45
0
-
-
1.17
ENST00000392133
17
ENSE00001316333
chr2:
217012806-217012999
194
XRCC5_HUMAN
493-557
65
0
-
-
1.18
ENST00000392133
18
ENSE00000785545
chr2:
217024791-217024884
94
XRCC5_HUMAN
557-588
32
0
-
-
1.19
ENST00000392133
19
ENSE00001312814
chr2:
217026702-217026771
70
XRCC5_HUMAN
589-612
24
1
A:1-23
23
1.20
ENST00000392133
20
ENSE00001299331
chr2:
217054948-217055057
110
XRCC5_HUMAN
612-648
37
1
A:23-59
37
1.21
ENST00000392133
21
ENSE00001319280
chr2:
217057362-217057458
97
XRCC5_HUMAN
649-681
33
1
A:60-92
33
1.22
ENST00000392133
22
ENSE00001306763
chr2:
217059642-217059709
68
XRCC5_HUMAN
681-703
23
1
A:92-114
23
1.23b
ENST00000392133
23b
ENSE00001290848
chr2:
217069045-217069119
75
XRCC5_HUMAN
704-728
25
1
A:115-120
6
1.24e
ENST00000392133
24e
ENSE00001702636
chr2:
217069911-217071026
1116
XRCC5_HUMAN
729-732
4
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1q2za_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
C-terminal domain of Ku80
(2)
Family
:
C-terminal domain of Ku80
(2)
Protein domain
:
C-terminal domain of Ku80
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1q2za_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ku_PK_bind_1q2zA01 (A:3-119)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Ku_PK_bind]
(2)
Family
:
Ku_PK_bind
(2)
Homo sapiens (Human)
(2)
1a
Ku_PK_bind-1q2zA01
A:3-119
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (656 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1Q2Z
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
