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1Q19
Asym. Unit
Info
Asym.Unit (334 KB)
Biol.Unit 1 (328 KB)
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(1)
Title
:
CARBAPENAM SYNTHETASE
Authors
:
M. T. Miller, B. Gerratana, A. Stapon, C. A. Townsend, A. C. Rosenzweig
Date
:
18 Jul 03 (Deposition) - 04 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Cmpr, (2S, 5S)-5-Carboxymethylproline; B-Ls, B-Lactam Synthetase; As-B, Class B Asparagine Synthetase; Amp-Cpp, A, B-Methyleneadenosine 5-Triphosphate; Cea, N2-(Carboxyethyl)- L-Arginine; Cma, N2-(Carboxylmethyl)-L-Arginine, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. T. Miller, B. Gerratana, A. Stapon, C. A. Townsend, A. C. Rosenzweig
Crystal Structure Of Carbapenam Synthetase (Cara)
J. Biol. Chem. V. 278 40996 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCa)
1b: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCb)
1c: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCc)
1d: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: (2S,5S)-5-CARBOXYMETHYLPROLINE (SSCa)
3b: (2S,5S)-5-CARBOXYMETHYLPROLINE (SSCb)
3c: (2S,5S)-5-CARBOXYMETHYLPROLINE (SSCc)
3d: (2S,5S)-5-CARBOXYMETHYLPROLINE (SSCd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
APC
4
Ligand/Ion
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
SSC
4
Ligand/Ion
(2S,5S)-5-CARBOXYMETHYLPROLINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:444 , APC A:505 , HOH A:507
BINDING SITE FOR RESIDUE MG A 504
02
AC2
SOFTWARE
SER D:246 , ILE D:444 , APC D:505 , HOH D:553
BINDING SITE FOR RESIDUE MG D 504
03
AC3
SOFTWARE
SER B:246 , ILE B:444 , APC B:505 , HOH B:548
BINDING SITE FOR RESIDUE MG B 504
04
AC4
SOFTWARE
SER C:246 , ILE C:444 , APC C:505
BINDING SITE FOR RESIDUE MG C 504
05
AC5
SOFTWARE
PRO A:244 , LEU A:245 , SER A:246 , GLY A:248 , LEU A:249 , ASP A:250 , SER A:251 , TYR A:268 , SER A:269 , ILE A:270 , LEU A:327 , THR A:343 , GLY A:344 , TYR A:345 , ASP A:348 , LYS A:421 , LYS A:443 , ILE A:444 , GLY A:445 , ILE A:446 , MG A:504 , SSC A:506 , HOH A:507 , HOH A:560 , HOH A:598
BINDING SITE FOR RESIDUE APC A 505
06
AC6
SOFTWARE
PRO B:244 , LEU B:245 , SER B:246 , GLY B:248 , LEU B:249 , ASP B:250 , SER B:251 , TYR B:268 , SER B:269 , ILE B:270 , LEU B:327 , GLY B:344 , TYR B:345 , ASP B:348 , LYS B:421 , LYS B:443 , ILE B:444 , GLY B:445 , ILE B:446 , MG B:504 , SSC B:506 , HOH B:507 , HOH B:554
BINDING SITE FOR RESIDUE APC B 505
07
AC7
SOFTWARE
PRO C:244 , LEU C:245 , SER C:246 , GLY C:248 , LEU C:249 , ASP C:250 , SER C:251 , TYR C:268 , SER C:269 , ILE C:270 , THR C:343 , GLY C:344 , TYR C:345 , ASP C:348 , LYS C:421 , LYS C:442 , ILE C:444 , GLY C:445 , ILE C:446 , SER C:450 , MG C:504 , SSC C:506
BINDING SITE FOR RESIDUE APC C 505
08
AC8
SOFTWARE
PRO D:244 , LEU D:245 , SER D:246 , GLY D:248 , LEU D:249 , ASP D:250 , SER D:251 , TYR D:268 , SER D:269 , ILE D:270 , LEU D:327 , THR D:343 , GLY D:344 , ASP D:348 , LYS D:421 , LYS D:443 , ILE D:444 , GLY D:445 , ILE D:446 , MG D:504 , SSC D:506 , HOH D:529 , HOH D:554 , HOH D:565
BINDING SITE FOR RESIDUE APC D 505
09
AC9
SOFTWARE
ILE A:323 , TYR A:345 , GLY A:346 , LEU A:349 , ARG A:374 , GLU A:380 , APC A:505 , HOH A:561
BINDING SITE FOR RESIDUE SSC A 506
10
BC1
SOFTWARE
ILE B:323 , TYR B:345 , GLY B:346 , ASP B:348 , LEU B:349 , GLN B:371 , APC B:505 , HOH B:543
BINDING SITE FOR RESIDUE SSC B 506
11
BC2
SOFTWARE
LEU D:319 , ILE D:323 , TYR D:345 , GLY D:346 , ASP D:348 , GLN D:371 , APC D:505 , HOH D:554
BINDING SITE FOR RESIDUE SSC D 506
12
BC3
SOFTWARE
LEU C:319 , TYR C:345 , GLY C:346 , GLN C:371 , ARG C:374 , APC C:505 , HOH C:527 , HOH C:543
BINDING SITE FOR RESIDUE SSC C 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1q19a2 (A:2-205)
1b: SCOP_d1q19b2 (B:2-205)
1c: SCOP_d1q19c2 (C:2-205)
1d: SCOP_d1q19d2 (D:2-205)
2a: SCOP_d1q19a1 (A:206-501)
2b: SCOP_d1q19b1 (B:206-501)
2c: SCOP_d1q19c1 (C:206-501)
2d: SCOP_d1q19d1 (D:206-501)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Class II glutamine amidotransferases
(27)
Protein domain
:
beta-Lactam synthetase
(7)
Pectobacterium carotovorum [TaxId: 554]
(2)
1a
d1q19a2
A:2-205
1b
d1q19b2
B:2-205
1c
d1q19c2
C:2-205
1d
d1q19d2
D:2-205
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
beta-Lactam synthetase
(7)
Pectobacterium carotovorum [TaxId: 554]
(2)
2a
d1q19a1
A:206-501
2b
d1q19b1
B:206-501
2c
d1q19c1
C:206-501
2d
d1q19d1
D:206-501
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1q19A02 (A:207-501)
1b: CATH_1q19B02 (B:207-501)
1c: CATH_1q19C02 (C:207-501)
1d: CATH_1q19D02 (D:207-501)
2a: CATH_1q19A01 (A:2-206)
2b: CATH_1q19B01 (B:2-206)
2c: CATH_1q19C01 (C:2-206)
2d: CATH_1q19D01 (D:2-206)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Pectobacterium carotovorum. Organism_taxid: 554.
(2)
1a
1q19A02
A:207-501
1b
1q19B02
B:207-501
1c
1q19C02
C:207-501
1d
1q19D02
D:207-501
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Pectobacterium carotovorum. Organism_taxid: 554.
(2)
2a
1q19A01
A:2-206
2b
1q19B01
B:2-206
2c
1q19C01
C:2-206
2d
1q19D01
D:2-206
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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