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1Q0X
Asym. Unit
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Asym.Unit (77 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
ANTI-MORPHINE ANTIBODY 9B1 UNLIGANDED FORM
Authors
:
E. Pozharski, M. A. Wilson, A. Hewagama, A. B. Shanafelt, G. Petsko, D. R
Date
:
17 Jul 03 (Deposition) - 20 Apr 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Anti-Morphine Antibody, Fab Fragment, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Pozharski, M. A. Wilson, A. Hewagama, A. B. Shanafelt, G. Petsko, D. Ringe
Anchoring A Cationic Ligand: The Structure Of The Fab Fragment Of The Anti-Morphine Antibody 9B1 And Its Complex With Morphine
J. Mol. Biol. V. 337 691 2004
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: TETRAETHYLENE GLYCOL (PG4a)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR H:27 , THR H:28 , HOH H:608 , GLU L:7 , SER L:8 , HOH L:424
BINDING SITE FOR RESIDUE SO4 H 401
2
AC2
SOFTWARE
THR L:182 , ARG L:184 , ARG L:188
BINDING SITE FOR RESIDUE SO4 L 402
3
AC3
SOFTWARE
GLU H:50 , TRP H:95 , TRP L:91
BINDING SITE FOR RESIDUE PG4 H 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1q0xh2 (H:114-228)
2a: SCOP_d1q0xl2 (L:108-212)
3a: SCOP_d1q0xh1 (H:1-113)
4a: SCOP_d1q0xl1 (L:1-107)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1q0xh2
H:114-228
Protein domain
:
Immunoglobulin light chain lambda constant domain, CL-lambda
(68)
Human (Homo sapiens) [TaxId: 9606]
(46)
2a
d1q0xl2
L:108-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1q0xh1
H:1-113
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Mouse (Mus musculus) [TaxId: 10090]
(35)
4a
d1q0xl1
L:1-107
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1q0xH01 (H:1-113)
1b: CATH_1q0xH02 (H:114-227)
1c: CATH_1q0xL01 (L:1-107)
1d: CATH_1q0xL02 (L:108-210)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1q0xH01
H:1-113
1b
1q0xH02
H:114-227
1c
1q0xL01
L:1-107
1d
1q0xL02
L:108-210
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_V_set_1q0xL01 (L:2-91)
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Clan
:
Ig
(577)
Family
:
V-set
(144)
Mus musculus (Mouse)
(63)
1a
V-set-1q0xL01
L:2-91
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Asymmetric Unit 1
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Asym.Unit (77 KB)
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