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1Q0C
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (218 KB)
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Title
:
ANEROBIC SUBSTRATE COMPLEX OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM BREVIBACTERIUM FUSCUM. (COMPLEX WITH 3,4-DIHYDROXYPHENYLACETATE)
Authors
:
M. W. Vetting, L. P. Wackett, L. Que, J. D. Lipscomb, D. H. Ohlendorf
Date
:
15 Jul 03 (Deposition) - 29 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Extradiol Dioxygenase, Substrate Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, L. P. Wackett, L. Que, J. D. Lipscomb, D. H. Ohlendorf
Crystallographic Comparison Of Manganese- And Iron-Dependent Homoprotocatechuate 2, 3-Dioxygenases.
J. Bacteriol. V. 186 1945 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID (DHYa)
1b: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID (DHYb)
1c: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID (DHYc)
1d: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID (DHYd)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DHY
4
Ligand/Ion
2-(3,4-DIHYDROXYPHENYL)ACETIC ACID
2
FE
4
Ligand/Ion
FE (III) ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:155 , HIS A:214 , GLU A:267 , DHY A:999
BINDING SITE FOR RESIDUE FE A 500
2
AC2
SOFTWARE
HIS B:155 , HIS B:214 , GLU B:267 , DHY B:999
BINDING SITE FOR RESIDUE FE B 500
3
AC3
SOFTWARE
HIS C:155 , HIS C:214 , GLU C:267 , DHY C:999
BINDING SITE FOR RESIDUE FE C 500
4
AC4
SOFTWARE
HIS D:155 , HIS D:214 , GLU D:267 , DHY D:999
BINDING SITE FOR RESIDUE FE D 500
5
AC5
SOFTWARE
HIS A:155 , ASN A:157 , TRP A:192 , HIS A:200 , HIS A:214 , ARG A:243 , HIS A:248 , VAL A:250 , SER A:251 , TYR A:257 , GLU A:267 , TYR A:269 , ARG A:293 , TRP A:304 , FE A:500
BINDING SITE FOR RESIDUE DHY A 999
6
AC6
SOFTWARE
HIS B:155 , TRP B:192 , HIS B:200 , HIS B:214 , ARG B:243 , HIS B:248 , VAL B:250 , SER B:251 , TYR B:257 , GLU B:267 , ARG B:293 , TRP B:304 , FE B:500
BINDING SITE FOR RESIDUE DHY B 999
7
AC7
SOFTWARE
HIS C:155 , ASN C:157 , TRP C:192 , HIS C:200 , HIS C:214 , ARG C:243 , HIS C:248 , VAL C:250 , SER C:251 , TYR C:257 , GLU C:267 , TYR C:269 , ARG C:293 , TRP C:304 , FE C:500
BINDING SITE FOR RESIDUE DHY C 999
8
AC8
SOFTWARE
HIS D:155 , ASN D:157 , TRP D:192 , HIS D:200 , HIS D:214 , ARG D:243 , HIS D:248 , VAL D:250 , SER D:251 , TYR D:257 , GLU D:267 , TYR D:269 , ARG D:293 , TRP D:304 , FE D:500
BINDING SITE FOR RESIDUE DHY D 999
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1q0ca1 (A:4-147)
1b: SCOP_d1q0cc1 (C:4-147)
1c: SCOP_d1q0cc2 (C:148-322)
1d: SCOP_d1q0cd1 (D:4-147)
1e: SCOP_d1q0cd2 (D:148-322)
1f: SCOP_d1q0ca2 (A:148-322)
1g: SCOP_d1q0cb1 (B:4-147)
1h: SCOP_d1q0cb2 (B:148-322)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Extradiol dioxygenases
(43)
Protein domain
:
Homoprotocatechuate 2,3-dioxygenase
(17)
Brevibacterium fuscum [TaxId: 47914]
(14)
1a
d1q0ca1
A:4-147
1b
d1q0cc1
C:4-147
1c
d1q0cc2
C:148-322
1d
d1q0cd1
D:4-147
1e
d1q0cd2
D:148-322
1f
d1q0ca2
A:148-322
1g
d1q0cb1
B:4-147
1h
d1q0cb2
B:148-322
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1q0cA01 (A:4-138)
1b: CATH_1q0cA02 (A:150-311)
1c: CATH_1q0cB02 (B:150-311)
1d: CATH_1q0cC02 (C:150-311)
1e: CATH_1q0cD02 (D:150-311)
1f: CATH_1q0cB01 (B:4-138)
1g: CATH_1q0cC01 (C:4-138)
1h: CATH_1q0cD01 (D:4-138)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Brevibacterium fuscum. Organism_taxid: 47914.
(3)
1a
1q0cA01
A:4-138
1b
1q0cA02
A:150-311
1c
1q0cB02
B:150-311
1d
1q0cC02
C:150-311
1e
1q0cD02
D:150-311
1f
1q0cB01
B:4-138
1g
1q0cC01
C:4-138
1h
1q0cD01
D:4-138
[
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]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Glyoxalase_1q0cD01 (D:152-268)
1b: PFAM_Glyoxalase_1q0cD02 (D:152-268)
1c: PFAM_Glyoxalase_1q0cD03 (D:152-268)
1d: PFAM_Glyoxalase_1q0cD04 (D:152-268)
1e: PFAM_Glyoxalase_1q0cD05 (D:152-268)
1f: PFAM_Glyoxalase_1q0cD06 (D:152-268)
1g: PFAM_Glyoxalase_1q0cD07 (D:152-268)
1h: PFAM_Glyoxalase_1q0cD08 (D:152-268)
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)
Organisms
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)
(
)
Clan
:
Glyoxalase
(58)
Family
:
Glyoxalase
(34)
Brevibacterium fuscum
(6)
1a
Glyoxalase-1q0cD01
D:152-268
1b
Glyoxalase-1q0cD02
D:152-268
1c
Glyoxalase-1q0cD03
D:152-268
1d
Glyoxalase-1q0cD04
D:152-268
1e
Glyoxalase-1q0cD05
D:152-268
1f
Glyoxalase-1q0cD06
D:152-268
1g
Glyoxalase-1q0cD07
D:152-268
1h
Glyoxalase-1q0cD08
D:152-268
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Asymmetric Unit 1
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