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Getting 'Exon' information from database.
1PZL
Asym. Unit
Info
Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGAND AND THE COACTIVATOR SRC-1 PEPTIDE
Authors
:
K. Duda, Y. -I. Chi, S. Dhe-Paganon, S. Shoelson
Date
:
11 Jul 03 (Deposition) - 01 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Duda, Y. -I. Chi, S. Shoelson
Structural Basis For Hnf-4Alpha Activation By Ligand And Coactivator Binding
J. Biol. Chem. V. 279 23311 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MYR
1
Ligand/Ion
MYRISTIC ACID
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:181 , GLN A:185 , ALA A:223 , ARG A:226 , LEU A:236 , GLY A:237 , ILE A:349 , HOH A:506
BINDING SITE FOR RESIDUE MYR A 500
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010600 (V255M, chain A, )
2: VAR_010601 (E276Q, chain A, )
3: VAR_071952 (M364R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010600
V
264
M
HNF4A_HUMAN
Polymorphism
139779712
A
V
255
M
2
UniProt
VAR_010601
E
285
Q
HNF4A_HUMAN
Disease (MODY1)
---
A
E
276
Q
3
UniProt
VAR_071952
M
373
R
HNF4A_HUMAN
Disease (MODY1)
---
A
M
364
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(7, 7)
Info
All Exons
Exon 1.6 (A:137-155)
Exon 1.7 (A:156-207 (gaps))
Exon 1.8 (A:208-237)
Exon 1.9 (A:237-289)
Exon 1.10a (A:289-368)
Exon 1.11b (A:368-369)
Exon 2.15a (B:7-20)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10a
6: Boundary 1.10a/1.11b
7: Boundary 1.11b/1.12b
8: Boundary 2.14/2.15a
9: Boundary 2.15a/2.16a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000316099
2b
ENSE00001216307
chr20:
43029924-43030127
204
HNF4A_HUMAN
1-39
39
0
-
-
1.4
ENST00000316099
4
ENSE00000662238
chr20:
43034698-43034872
175
HNF4A_HUMAN
39-97
59
0
-
-
1.5
ENST00000316099
5
ENSE00000662239
chr20:
43036021-43036115
95
HNF4A_HUMAN
97-129
33
0
-
-
1.6
ENST00000316099
6
ENSE00000662240
chr20:
43042334-43042440
107
HNF4A_HUMAN
129-164
36
1
A:137-155
19
1.7
ENST00000316099
7
ENSE00000662241
chr20:
43043147-43043302
156
HNF4A_HUMAN
165-216
52
1
A:156-207 (gaps)
52
1.8
ENST00000316099
8
ENSE00000662242
chr20:
43047065-43047152
88
HNF4A_HUMAN
217-246
30
1
A:208-237
30
1.9
ENST00000316099
9
ENSE00000662243
chr20:
43048361-43048516
156
HNF4A_HUMAN
246-298
53
1
A:237-289
53
1.10a
ENST00000316099
10a
ENSE00000662244
chr20:
43052658-43052894
237
HNF4A_HUMAN
298-377
80
1
A:289-368
80
1.11b
ENST00000316099
11b
ENSE00000662245
chr20:
43056975-43057127
153
HNF4A_HUMAN
377-428
52
1
A:368-369
2
1.12b
ENST00000316099
12b
ENSE00001216325
chr20:
43058163-43060026
1864
HNF4A_HUMAN
428-474
47
0
-
-
2.5c
ENST00000348332
5c
ENSE00001412482
chr2:
24807346-24807429
84
NCOA1_HUMAN
-
0
0
-
-
2.6b
ENST00000348332
6b
ENSE00001353786
chr2:
24866835-24866991
157
NCOA1_HUMAN
-
0
0
-
-
2.7a
ENST00000348332
7a
ENSE00002170964
chr2:
24881530-24881635
106
NCOA1_HUMAN
1-30
30
0
-
-
2.8
ENST00000348332
8
ENSE00001070983
chr2:
24888618-24888784
167
NCOA1_HUMAN
30-86
57
0
-
-
2.9
ENST00000348332
9
ENSE00001781523
chr2:
24896235-24896332
98
NCOA1_HUMAN
86-118
33
0
-
-
2.10
ENST00000348332
10
ENSE00001796214
chr2:
24905820-24905997
178
NCOA1_HUMAN
119-178
60
0
-
-
2.11
ENST00000348332
11
ENSE00001070993
chr2:
24914350-24914529
180
NCOA1_HUMAN
178-238
61
0
-
-
2.12
ENST00000348332
12
ENSE00001070995
chr2:
24916121-24916216
96
NCOA1_HUMAN
238-270
33
0
-
-
2.13
ENST00000348332
13
ENSE00001070992
chr2:
24920527-24920667
141
NCOA1_HUMAN
270-317
48
0
-
-
2.14
ENST00000348332
14
ENSE00001071000
chr2:
24927955-24928102
148
NCOA1_HUMAN
317-366
50
0
-
-
2.15a
ENST00000348332
15a
ENSE00001070985
chr2:
24929437-24930757
1321
NCOA1_HUMAN
366-806
441
1
B:7-20
14
2.16a
ENST00000348332
16a
ENSE00000808887
chr2:
24933800-24933980
181
NCOA1_HUMAN
807-867
61
0
-
-
2.17
ENST00000348332
17
ENSE00000808888
chr2:
24949458-24949575
118
NCOA1_HUMAN
867-906
40
0
-
-
2.18
ENST00000348332
18
ENSE00000808889
chr2:
24951177-24951345
169
NCOA1_HUMAN
906-962
57
0
-
-
2.19
ENST00000348332
19
ENSE00000808890
chr2:
24952370-24952684
315
NCOA1_HUMAN
963-1067
105
0
-
-
2.20
ENST00000348332
20
ENSE00000726392
chr2:
24962301-24962402
102
NCOA1_HUMAN
1068-1101
34
0
-
-
2.21
ENST00000348332
21
ENSE00000726395
chr2:
24964653-24965055
403
NCOA1_HUMAN
1102-1236
135
0
-
-
2.22
ENST00000348332
22
ENSE00000808891
chr2:
24974851-24975025
175
NCOA1_HUMAN
1236-1294
59
0
-
-
2.23
ENST00000348332
23
ENSE00000726401
chr2:
24980842-24981025
184
NCOA1_HUMAN
1294-1355
62
0
-
-
2.24
ENST00000348332
24
ENSE00000726404
chr2:
24985556-24985645
90
NCOA1_HUMAN
1356-1385
30
0
-
-
2.26b
ENST00000348332
26b
ENSE00001797482
chr2:
24991090-24993571
2482
NCOA1_HUMAN
1386-1441
56
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1pzla_ (A:)
2a: SCOP_d1pzlb_ (B:)
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Classes
(
)
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Folds
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Hepatocyte nuclear factor 4-alpha
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1pzla_
A:
Class
:
Peptides
(792)
Fold
:
Nuclear receptor coactivator Src-1
(3)
Superfamily
:
Nuclear receptor coactivator Src-1
(3)
Family
:
Nuclear receptor coactivator Src-1
(3)
Protein domain
:
Nuclear receptor coactivator Src-1
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1pzlb_
B:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pzlA00 (A:137-369)
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(
)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1pzlA00
A:137-369
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1pzlA01 (A:157-352)
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Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1pzlA01
A:157-352
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Asym.Unit (47 KB)
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