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1PYM
Asym. Unit
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Asym.Unit (111 KB)
Biol.Unit 1 (206 KB)
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(1)
Title
:
PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE
Authors
:
K. Huang, Z. Li, O. Herzberg
Date
:
25 Feb 99 (Deposition) - 21 Jul 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Phosphotransferase, Phosphomutase, P-C Bond Formation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Huang, Z. Li, Y. Jia, D. Dunaway-Mariano, O. Herzberg
Helix Swapping Between Two Alpha/Beta Barrels: Crystal Structure Of Phosphoenolpyruvate Mutase With Bound Mg(2+)-Oxalate.
Structure Fold. Des. V. 7 539 1999
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
3a: OXALATE ION (OXLa)
3b: OXALATE ION (OXLb)
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No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
3
OXL
2
Ligand/Ion
OXALATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: PEP (AUTHOR)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:44 , SER A:46 , GLY A:47 , LEU A:48 , ASP A:85 , ARG A:159 , ALA A:238 , MG A:1003 , HOH A:1073 , HOH A:1086 , HOH A:1109 , HOH A:1245
BINDING SITE FOR RESIDUE OXL A 1001
2
AC2
SOFTWARE
TRP B:44 , SER B:46 , GLY B:47 , LEU B:48 , ASP B:85 , ARG B:159 , ALA B:238 , MG B:1004 , HOH B:1010 , HOH B:1144
BINDING SITE FOR RESIDUE OXL B 1002
3
AC3
SOFTWARE
ASP A:85 , OXL A:1001 , HOH A:1073 , HOH A:1086 , HOH A:1158
BINDING SITE FOR RESIDUE MG A 1003
4
AC4
SOFTWARE
ASP B:85 , OXL B:1002 , HOH B:1089 , HOH B:1094 , HOH B:1115
BINDING SITE FOR RESIDUE MG B 1004
5
PEP
AUTHOR
ASP A:58 , ASP A:85 , ASP A:87 , GLU A:114 , ARG A:159 , LYS A:120 , GLY A:47 , LEU A:48 , ASP B:58 , ASP B:85 , ASP B:87 , GLU B:114 , ARG B:159 , LYS B:120 , GLY B:47 , LEU B:48
CATALYTIC SITE
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pyma_ (A:)
1b: SCOP_d1pymb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Phosphoenolpyruvate mutase/Isocitrate lyase-like
(20)
Protein domain
:
Phosphoenolpyruvate mutase
(6)
Blue mussel (Mytilus edulis) [TaxId: 6550]
(6)
1a
d1pyma_
A:
1b
d1pymb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pymB00 (B:5-293)
1b: CATH_1pymA00 (A:5-295)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Mytilus edulis. Organism_taxid: 6550.
(6)
1a
1pymB00
B:5-293
1b
1pymA00
A:5-295
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PEP_mutase_1pymB01 (B:11-257)
1b: PFAM_PEP_mutase_1pymB02 (B:11-257)
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Clan
:
PK_TIM
(63)
Family
:
PEP_mutase
(13)
Mytilus edulis (Blue mussel)
(6)
1a
PEP_mutase-1pymB01
B:11-257
1b
PEP_mutase-1pymB02
B:11-257
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Asymmetric Unit 1
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