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1PXX
Biol. Unit 2
Info
Asym.Unit (389 KB)
Biol.Unit 1 (192 KB)
Biol.Unit 2 (193 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DICLOFENAC BOUND TO THE CYCLOOXYGENASE ACTIVE SITE OF COX-2
Authors
:
J. R. Kiefer, S. W. Rowlinson, J. J. Prusakiewicz, J. L. Pawlitz, K. R. Ko A. S. Kalgutkar, W. C. Stallings, L. J. Marnett, R. G. Kurumbail
Date
:
07 Jul 03 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cox-2, Cyclooxygenase, Prostaglandin, Diclofenac, Endoperoxide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. Rowlinson, J. R. Kiefer, J. J. Prusakiewicz, J. L. Pawlitz, K. R. Kozak, A. S. Kalgutkar, W. C. Stallings, R. G. Kurumbail, L. J. Marnett
A Novel Mechanism Of Cyclooxygenase-2 Inhibition Involving Interactions With Ser-530 And Tyr-385.
J. Biol. Chem. V. 278 45763 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: 2-[2,6-DICHLOROPHENYL)AMINO]BENZEN... (DIFa)
2b: 2-[2,6-DICHLOROPHENYL)AMINO]BENZEN... (DIFb)
2c: 2-[2,6-DICHLOROPHENYL)AMINO]BENZEN... (DIFc)
2d: 2-[2,6-DICHLOROPHENYL)AMINO]BENZEN... (DIFd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
2
DIF
2
Ligand/Ion
2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
SER C:2038 , PRO C:2040 , TYR C:2055 , GLU C:2067 , ASN C:2068 , HOH C:5190
BINDING SITE FOR RESIDUE NAG C 2661
02
BC3
SOFTWARE
GLU C:2140 , ASN C:2144 , TYR C:2147 , ARG C:2216 , PHE C:2220 , NAG C:2672 , HOH C:5155
BINDING SITE FOR RESIDUE NAG C 2671
03
BC4
SOFTWARE
ARG C:2216 , NAG C:2671 , NAG C:2673 , ASP D:3239
BINDING SITE FOR RESIDUE NAG C 2672
04
BC5
SOFTWARE
NAG C:2672
BINDING SITE FOR RESIDUE NAG C 2673
05
BC6
SOFTWARE
GLN C:2406 , ASN C:2410 , ILE C:2413
BINDING SITE FOR RESIDUE NAG C 2681
06
BC7
SOFTWARE
SER D:3038 , PRO D:3040 , TYR D:3055 , GLU D:3067 , ASN D:3068
BINDING SITE FOR RESIDUE NAG D 3661
07
BC8
SOFTWARE
GLU D:3140 , ASN D:3144 , TYR D:3147 , ARG D:3216 , PHE D:3220 , NAG D:3672 , HOH D:5108
BINDING SITE FOR RESIDUE NAG D 3671
08
BC9
SOFTWARE
ASP C:2239 , ARG D:3216 , NAG D:3671 , NAG D:3673
BINDING SITE FOR RESIDUE NAG D 3672
09
CC1
SOFTWARE
NAG D:3672
BINDING SITE FOR RESIDUE NAG D 3673
10
CC2
SOFTWARE
GLN D:3406 , ASN D:3410 , ILE D:3413
BINDING SITE FOR RESIDUE NAG D 3681
11
CC4
SOFTWARE
LEU C:2183 , ARG C:2184 , ARG C:2185 , ARG C:2438 , ILE C:2442 , GLU C:2486 , GLU C:2490 , GLU D:3179 , LEU D:3183 , ARG D:3185 , ILE D:3442 , GLN D:3445
BINDING SITE FOR RESIDUE BOG D 3703
12
CC7
SOFTWARE
ALA C:2199 , PHE C:2200 , ALA C:2202 , GLN C:2203 , THR C:2206 , HIS C:2207 , PHE C:2210 , LYS C:2211 , THR C:2212 , VAL C:2295 , ASN C:2382 , TYR C:2385 , HIS C:2386 , HIS C:2388 , LEU C:2391 , VAL C:2447 , GLN C:2454
BINDING SITE FOR RESIDUE HEM C 2601
13
CC8
SOFTWARE
TYR D:3148 , ALA D:3199 , PHE D:3200 , GLN D:3203 , HIS D:3207 , PHE D:3210 , THR D:3212 , VAL D:3295 , ASN D:3382 , TYR D:3385 , HIS D:3386 , TRP D:3387 , HIS D:3388 , LEU D:3391 , VAL D:3447 , GLN D:3454 , HOH D:5235
BINDING SITE FOR RESIDUE HEM D 3601
14
DC2
SOFTWARE
TYR C:2348 , VAL C:2349 , LEU C:2352 , TYR C:2385 , TRP C:2387 , MET C:2522 , GLY C:2526 , ALA C:2527 , SER C:2530
BINDING SITE FOR RESIDUE DIF C 2701
15
DC3
SOFTWARE
TYR D:3348 , VAL D:3349 , LEU D:3352 , TYR D:3385 , TRP D:3387 , MET D:3522 , VAL D:3523 , GLY D:3526 , ALA D:3527 , SER D:3530
BINDING SITE FOR RESIDUE DIF D 3701
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (C:2110-2583,D:3110-3583)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
-
-
C:2110-2583
D:3110-3583
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1pxxa1 (A:74-583)
1b: SCOP_d1pxxb1 (B:1074-1583)
1c: SCOP_d1pxxc1 (C:2074-2583)
1d: SCOP_d1pxxd1 (D:3074-3583)
2a: SCOP_d1pxxa2 (A:33-73)
2b: SCOP_d1pxxb2 (B:1033-1073)
2c: SCOP_d1pxxc2 (C:2033-2073)
2d: SCOP_d1pxxd2 (D:3033-3073)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Mouse (Mus musculus) [TaxId: 10090]
(11)
1a
d1pxxa1
A:74-583
1b
d1pxxb1
B:1074-1583
1c
d1pxxc1
C:2074-2583
1d
d1pxxd1
D:3074-3583
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Mouse (Mus musculus) [TaxId: 10090]
(11)
2a
d1pxxa2
A:33-73
2b
d1pxxb2
B:1033-1073
2c
d1pxxc2
C:2033-2073
2d
d1pxxd2
D:3033-3073
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1pxxA02 (A:74-583)
1b: CATH_1pxxB02 (B:1074-1583)
1c: CATH_1pxxC02 (C:2074-2583)
1d: CATH_1pxxD02 (D:3074-3583)
2a: CATH_1pxxA01 (A:35-73)
2b: CATH_1pxxC01 (C:2033-2073)
2c: CATH_1pxxD01 (D:3033-3073)
2d: CATH_1pxxB01 (B:1033-1073)
View:
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Architectures
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
House mouse (Mus musculus)
(8)
1a
1pxxA02
A:74-583
1b
1pxxB02
B:1074-1583
1c
1pxxC02
C:2074-2583
1d
1pxxD02
D:3074-3583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
House mouse (Mus musculus)
(18)
2a
1pxxA01
A:35-73
2b
1pxxC01
C:2033-2073
2c
1pxxD01
D:3033-3073
2d
1pxxB01
B:1033-1073
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_An_peroxidase_1pxxD01 (D:3218-3582)
1b: PFAM_An_peroxidase_1pxxD02 (D:3218-3582)
1c: PFAM_An_peroxidase_1pxxD03 (D:3218-3582)
1d: PFAM_An_peroxidase_1pxxD04 (D:3218-3582)
1e: PFAM_An_peroxidase_1pxxD05 (D:3218-3582)
1f: PFAM_An_peroxidase_1pxxD06 (D:3218-3582)
1g: PFAM_An_peroxidase_1pxxD07 (D:3218-3582)
1h: PFAM_An_peroxidase_1pxxD08 (D:3218-3582)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Mus musculus (Mouse)
(11)
1a
An_peroxidase-1pxxD01
D:3218-3582
1b
An_peroxidase-1pxxD02
D:3218-3582
1c
An_peroxidase-1pxxD03
D:3218-3582
1d
An_peroxidase-1pxxD04
D:3218-3582
1e
An_peroxidase-1pxxD05
D:3218-3582
1f
An_peroxidase-1pxxD06
D:3218-3582
1g
An_peroxidase-1pxxD07
D:3218-3582
1h
An_peroxidase-1pxxD08
D:3218-3582
[
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]
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Chain D
Asymmetric Unit 1
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Asym.Unit (389 KB)
Header - Asym.Unit
Biol.Unit 1 (192 KB)
Header - Biol.Unit 1
Biol.Unit 2 (193 KB)
Header - Biol.Unit 2
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