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1PXD
Biol. Unit 1
Info
Asym.Unit (33 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF JACALIN WITH MESO-TETRASULPHONATOPHENYLPORPHYRIN.
Authors
:
M. Goel, P. Anuradha, K. J. Kaur, B. G. Maiya, M. J. Swamy, D. M. Salunke
Date
:
03 Jul 03 (Deposition) - 03 Feb 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Lectin, Porphyrin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goel, P. Anuradha, K. J. Kaur, B. G. Maiya, M. J. Swamy, D. M. Salunke
Porphyrin Binding To Jacalin Is Facilitated By The Inherent Plasticity Of The Carbohydrate-Binding Site: Novel Mode Of Lectin-Ligand Interaction.
Acta Crystallogr. , Sect. D V. 60 281 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: 5,10,15,20-TETRAKIS(4-SULPFONATOPH... (SFPa)
1b: 5,10,15,20-TETRAKIS(4-SULPFONATOPH... (SFPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SFP
8
Ligand/Ion
5,10,15,20-TETRAKIS(4-SULPFONATOPHENYL)-21H,23H-PORPHINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:1 , LYS A:21 , THR A:52 , PRO A:53 , SER A:76 , TYR A:78 , TYR A:122 , SFP A:135 , HOH A:155
BINDING SITE FOR RESIDUE SFP A 134
2
AC2
SOFTWARE
ASN A:20 , LYS A:21 , GLY A:50 , PHE A:51 , THR A:52 , PRO A:53 , LYS A:91 , SFP A:134 , HOH A:160
BINDING SITE FOR RESIDUE SFP A 135
[
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SAPs(SNPs)/Variants
(12, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_LECA_ARTIN_001 (V31I, chain A, )
02: VAR_LECA_ARTIN_002 (L34G, chain A, )
03: VAR_LECA_ARTIN_003 (K45L, chain A, )
04: VAR_LECA_ARTIN_004 (K45T, chain A, )
05: VAR_LECA_ARTIN_005 (M66D, chain A, )
06: VAR_LECA_ARTIN_006 (M66V, chain A, )
07: VAR_LECA_ARTIN_007 (E67M, chain A, )
08: VAR_LECA_ARTIN_008 (T72I, chain A, )
09: VAR_LECA_ARTIN_009 (N74K, chain A, )
10: VAR_LECA_ARTIN_010 (T102D, chain A, )
11: VAR_LECA_ARTIN_011 (I113V, chain A, )
12: VAR_LECA_ARTIN_012 (L131N, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_LECA_ARTIN_001
*
V
31
I
LECA_ARTIN
---
---
A
V
31
I
02
UniProt
VAR_LECA_ARTIN_002
*
L
34
G
LECA_ARTIN
---
---
A
L
34
G
03
UniProt
VAR_LECA_ARTIN_003
*
K
45
L
LECA_ARTIN
---
---
A
K
45
L
04
UniProt
VAR_LECA_ARTIN_004
*
K
45
T
LECA_ARTIN
---
---
A
K
45
T
05
UniProt
VAR_LECA_ARTIN_005
*
M
66
D
LECA_ARTIN
---
---
A
M
66
D
06
UniProt
VAR_LECA_ARTIN_006
*
M
66
V
LECA_ARTIN
---
---
A
M
66
V
07
UniProt
VAR_LECA_ARTIN_007
*
E
67
M
LECA_ARTIN
---
---
A
E
67
M
08
UniProt
VAR_LECA_ARTIN_008
*
T
72
I
LECA_ARTIN
---
---
A
T
72
I
09
UniProt
VAR_LECA_ARTIN_009
*
N
74
K
LECA_ARTIN
---
---
A
N
74
K
10
UniProt
VAR_LECA_ARTIN_010
*
T
102
D
LECA_ARTIN
---
---
A
T
102
D
11
UniProt
VAR_LECA_ARTIN_011
*
I
113
V
LECA_ARTIN
---
---
A
I
113
V
12
UniProt
VAR_LECA_ARTIN_012
*
L
131
N
LECA_ARTIN
---
---
A
L
131
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-133)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
LECA_ARTIN
1-133
4
A:1-133
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pxd_1 (B:,A:)
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)
(
)
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Jacalin
(12)
Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
(10)
1a
d1pxd.1
B:,A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pxdA00 (A:1-133)
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Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Artocarpus integer. Organism_taxid: 3490.
(3)
1a
1pxdA00
A:1-133
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Jacalin_1pxdA01 (A:1-133)
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Clans
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)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Artocarpus integer (Jack fruit) (Artocarpus integrifolia)
(15)
1a
Jacalin-1pxdA01
A:1-133
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Asym.Unit (33 KB)
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