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1PXD
Asym. Unit
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Asym.Unit (33 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF JACALIN WITH MESO-TETRASULPHONATOPHENYLPORPHYRIN.
Authors
:
M. Goel, P. Anuradha, K. J. Kaur, B. G. Maiya, M. J. Swamy, D. M. Salunke
Date
:
03 Jul 03 (Deposition) - 03 Feb 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Lectin, Porphyrin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goel, P. Anuradha, K. J. Kaur, B. G. Maiya, M. J. Swamy, D. M. Salunke
Porphyrin Binding To Jacalin Is Facilitated By The Inherent Plasticity Of The Carbohydrate-Binding Site: Novel Mode Of Lectin-Ligand Interaction.
Acta Crystallogr. , Sect. D V. 60 281 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5,10,15,20-TETRAKIS(4-SULPFONATOPH... (SFPa)
1b: 5,10,15,20-TETRAKIS(4-SULPFONATOPH... (SFPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SFP
2
Ligand/Ion
5,10,15,20-TETRAKIS(4-SULPFONATOPHENYL)-21H,23H-PORPHINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:1 , LYS A:21 , THR A:52 , PRO A:53 , SER A:76 , TYR A:78 , TYR A:122 , SFP A:135 , HOH A:155
BINDING SITE FOR RESIDUE SFP A 134
2
AC2
SOFTWARE
ASN A:20 , LYS A:21 , GLY A:50 , PHE A:51 , THR A:52 , PRO A:53 , LYS A:91 , SFP A:134 , HOH A:160
BINDING SITE FOR RESIDUE SFP A 135
[
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SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_LECA_ARTIN_001 (V31I, chain A, )
02: VAR_LECA_ARTIN_002 (L34G, chain A, )
03: VAR_LECA_ARTIN_003 (K45L, chain A, )
04: VAR_LECA_ARTIN_004 (K45T, chain A, )
05: VAR_LECA_ARTIN_005 (M66D, chain A, )
06: VAR_LECA_ARTIN_006 (M66V, chain A, )
07: VAR_LECA_ARTIN_007 (E67M, chain A, )
08: VAR_LECA_ARTIN_008 (T72I, chain A, )
09: VAR_LECA_ARTIN_009 (N74K, chain A, )
10: VAR_LECA_ARTIN_010 (T102D, chain A, )
11: VAR_LECA_ARTIN_011 (I113V, chain A, )
12: VAR_LECA_ARTIN_012 (L131N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_LECA_ARTIN_001
*
V
31
I
LECA_ARTIN
---
---
A
V
31
I
02
UniProt
VAR_LECA_ARTIN_002
*
L
34
G
LECA_ARTIN
---
---
A
L
34
G
03
UniProt
VAR_LECA_ARTIN_003
*
K
45
L
LECA_ARTIN
---
---
A
K
45
L
04
UniProt
VAR_LECA_ARTIN_004
*
K
45
T
LECA_ARTIN
---
---
A
K
45
T
05
UniProt
VAR_LECA_ARTIN_005
*
M
66
D
LECA_ARTIN
---
---
A
M
66
D
06
UniProt
VAR_LECA_ARTIN_006
*
M
66
V
LECA_ARTIN
---
---
A
M
66
V
07
UniProt
VAR_LECA_ARTIN_007
*
E
67
M
LECA_ARTIN
---
---
A
E
67
M
08
UniProt
VAR_LECA_ARTIN_008
*
T
72
I
LECA_ARTIN
---
---
A
T
72
I
09
UniProt
VAR_LECA_ARTIN_009
*
N
74
K
LECA_ARTIN
---
---
A
N
74
K
10
UniProt
VAR_LECA_ARTIN_010
*
T
102
D
LECA_ARTIN
---
---
A
T
102
D
11
UniProt
VAR_LECA_ARTIN_011
*
I
113
V
LECA_ARTIN
---
---
A
I
113
V
12
UniProt
VAR_LECA_ARTIN_012
*
L
131
N
LECA_ARTIN
---
---
A
L
131
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-133)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
LECA_ARTIN
1-133
1
A:1-133
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pxd_1 (B:,A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Jacalin
(12)
Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
(10)
1a
d1pxd.1
B:,A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pxdA00 (A:1-133)
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Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Artocarpus integer. Organism_taxid: 3490.
(3)
1a
1pxdA00
A:1-133
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Jacalin_1pxdA01 (A:1-133)
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)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Artocarpus integer (Jack fruit) (Artocarpus integrifolia)
(15)
1a
Jacalin-1pxdA01
A:1-133
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Asym.Unit (33 KB)
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