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1PWQ
Biol. Unit 2
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Asym.Unit (253 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANTHRAX LETHAL FACTOR COMPLEXED WITH THIOACETYL-TYR-PRO-MET-AMIDE, A METAL-CHELATING PEPTIDYL SMALL MOLECULE INHIBITOR
Authors
:
T. Y. Wong, R. Schwarzenbacher, R. C. Liddington
Date
:
02 Jul 03 (Deposition) - 13 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.52
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Anthrax Toxin, Lethal Factor, Metal-Chelator, Small Molecule Peptidic Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. E. Turk, T. Y. Wong, R. Schwarzenbacher, E. T. Jarrell, S. H. Leppla, R. J. Collier, R. C. Liddington, L. C. Cantley
The Structural Basis For Substrate And Inhibitor Selectivity Of The Anthrax Lethal Factor.
Nat. Struct. Mol. Biol. V. 11 60 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-(SULFANYLACETYL)TYROSYLPROLYLMET... (SD2a)
1b: N-(SULFANYLACETYL)TYROSYLPROLYLMET... (SD2b)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SD2
1
Ligand/Ion
N-(SULFANYLACETYL)TYROSYLPROLYLMETHIONINAMIDE
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS B:686 , HIS B:690 , GLU B:735 , SD2 B:9003
BINDING SITE FOR RESIDUE ZN B 9002
2
AC4
SOFTWARE
HIS B:654 , SER B:655 , LYS B:656 , GLY B:657 , SER B:672 , LYS B:673 , GLY B:674 , VAL B:675 , GLU B:676 , LEU B:677 , HIS B:686 , GLU B:687 , TYR B:728 , GLU B:735 , GLU B:739 , ARG B:742 , ZN B:9002
BINDING SITE FOR RESIDUE SD2 B 9003
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_LEF_BACAN_001 (S266S, chain B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LEF_BACAN_001
*
A
299
S
LEF_BACAN
---
---
B
S
266
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (B:683-692)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
LEF_BACAN
716-725
1
-
B:683-692
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1pwqa3 (A:264-550)
1b: SCOP_d1pwqb3 (B:264-550)
2a: SCOP_d1pwqa1 (A:27-263)
2b: SCOP_d1pwqa2 (A:551-776)
2c: SCOP_d1pwqb1 (B:27-263)
2d: SCOP_d1pwqb2 (B:551-776)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
Anthrax toxin lethal factor, middle domain
(9)
Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
(9)
1a
d1pwqa3
A:264-550
1b
d1pwqb3
B:264-550
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Anthrax toxin lethal factor, N- and C-terminal domains
(10)
Protein domain
:
Anthrax toxin lethal factor, N- and C-terminal domains
(9)
Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
(9)
2a
d1pwqa1
A:27-263
2b
d1pwqa2
A:551-776
2c
d1pwqb1
B:27-263
2d
d1pwqb2
B:551-776
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1pwqA04 (A:552-772)
1b: CATH_1pwqB04 (B:552-772)
1c: CATH_1pwqB01 (B:28-248)
1d: CATH_1pwqA01 (A:27-248)
2a: CATH_1pwqA02 (A:263-297,A:385-550)
2b: CATH_1pwqB02 (B:263-297,B:385-550)
3a: CATH_1pwqB03 (B:303-382)
3b: CATH_1pwqA03 (A:303-382)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Bacillus anthracis. Organism_taxid: 1392.
(15)
1a
1pwqA04
A:552-772
1b
1pwqB04
B:552-772
1c
1pwqB01
B:28-248
1d
1pwqA01
A:27-248
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Toxin ADP-ribosyltransferase; Chain A, domain 1
(46)
Homologous Superfamily
:
Toxin ADP-ribosyltransferase; Chain A, domain 1
(46)
Bacillus anthracis. Organism_taxid: 1392.
(8)
2a
1pwqA02
A:263-297,A:385-550
2b
1pwqB02
B:263-297,B:385-550
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Anthrax toxin lethal factor, domain 3, chain A
(9)
Homologous Superfamily
:
Anthrax toxin lethal factor, domain 3, chain A
(9)
Bacillus anthracis. Organism_taxid: 1392.
(8)
3a
1pwqB03
B:303-382
3b
1pwqA03
A:303-382
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_ATLF_1pwqB01 (B:553-775)
1b: PFAM_ATLF_1pwqB02 (B:553-775)
1c: PFAM_ATLF_1pwqB03 (B:553-775)
1d: PFAM_ATLF_1pwqB04 (B:553-775)
2a: PFAM_Anthrax_tox_M_1pwqB05 (B:264-550)
2b: PFAM_Anthrax_tox_M_1pwqB06 (B:264-550)
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Clan
:
no clan defined [family: ATLF]
(15)
Family
:
ATLF
(15)
Bacillus anthracis
(15)
1a
ATLF-1pwqB01
B:553-775
1b
ATLF-1pwqB02
B:553-775
1c
ATLF-1pwqB03
B:553-775
1d
ATLF-1pwqB04
B:553-775
Clan
:
no clan defined [family: Anthrax-tox_M]
(6)
Family
:
Anthrax-tox_M
(6)
Bacillus anthracis
(6)
2a
Anthrax-tox_M-1pwqB05
B:264-550
2b
Anthrax-tox_M-1pwqB06
B:264-550
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Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (125 KB)
Header - Biol.Unit 1
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