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1PW1
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (130 KB)
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(1)
Title
:
NON-COVALENT COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH A HIGHLY SPECIFIC PENICILLIN
Authors
:
N. R. Silvaggi, H. R. Josephine, R. F. Pratt, J. A. Kelly
Date
:
30 Jun 03 (Deposition) - 13 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Lactam, Antibiotics, Penicillin Binding Protein, Enzyme, Peptidoglycan, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. R. Silvaggi, H. R. Josephine, A. P. Kuzin, R. Nagarajan, R. F. Pratt, J. A. Kelly
Crystal Structures Of Complexes Between The R61 Dd-Peptidas And Peptidoglycan-Mimetic Beta-Lactams: A Non-Covalent Complex With A "Perfect Penicillin"
J. Mol. Biol. V. 345 521 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: FORMYL GROUP (FORa)
1b: FORMYL GROUP (FORb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: (2S,5R,6R)-6-{[(6R)-6-(GLYCYLAMINO... (HELa)
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No.
Name
Count
Type
Full Name
1
FOR
2
Mod. Residue
FORMYL GROUP
2
GOL
3
Ligand/Ion
GLYCEROL
3
HEL
1
Ligand/Ion
(2S,5R,6R)-6-{[(6R)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:62 , PHE A:120 , THR A:123 , TYR A:159 , ASN A:161 , LEU A:214 , TRP A:233 , ARG A:285 , HIS A:298 , THR A:299 , GLY A:300 , THR A:301 , GLN A:303 , SER A:326 , ASN A:327 , FOR A:600 , HOH A:2013 , HOH A:2110 , HOH A:2209 , HOH A:2249 , HOH A:2271
BINDING SITE FOR RESIDUE HEL A 400
2
AC2
SOFTWARE
LEU A:19 , SER A:20 , GLN A:21 , GLY A:22 , LYS A:80 , GOL A:501 , HOH A:2207 , HOH A:2286 , HOH A:2350 , HOH A:2365 , HOH A:2548
BINDING SITE FOR RESIDUE GOL A 500
3
AC3
SOFTWARE
ARG A:46 , THR A:175 , GLY A:220 , GLY A:221 , GOL A:500 , HOH A:2024 , HOH A:2094 , HOH A:2199 , HOH A:2365 , HOH A:2369 , HOH A:2404 , HOH A:2426
BINDING SITE FOR RESIDUE GOL A 501
4
AC4
SOFTWARE
VAL A:204 , ILE A:205 , GLY A:207 , HIS A:209 , LYS A:346 , HOH A:2016 , HOH A:2091 , HOH A:2230 , HOH A:2360
BINDING SITE FOR RESIDUE GOL A 502
5
AC5
SOFTWARE
LYS A:65 , HIS A:108 , TYR A:159 , ARG A:285 , HEL A:400 , FOR A:601
BINDING SITE FOR RESIDUE FOR A 600
6
AC6
SOFTWARE
LYS A:65 , HIS A:108 , TYR A:159 , TYR A:280 , FOR A:600
BINDING SITE FOR RESIDUE FOR A 601
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pw1a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
D-ala carboxypeptidase/transpeptidase
(21)
Streptomyces sp., R61 [TaxId: 1931]
(14)
1a
d1pw1a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pw1A00 (A:3-347)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
R61 (Streptomyces sp)
(15)
1a
1pw1A00
A:3-347
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Beta_lactamase_1pw1A01 (A:3-342)
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Clans
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(
)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase
(79)
Streptomyces sp. (strain R61)
(8)
1a
Beta-lactamase-1pw1A01
A:3-342
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Chain A
Asymmetric Unit 1
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Asym.Unit (134 KB)
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