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1PVC
Biol. Unit 1
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Asym.Unit (151 KB)
Biol.Unit 1, α-C (8.2 MB)
Biol.Unit 1 (8.2 MB)
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(1)
Title
:
REFINEMENT OF THE SABIN STRAIN OF TYPE 3 POLIOVIRUS AT 2.4 ANGSTROMS AND THE CRYSTAL STRUCTURES OF ITS VARIANTS AT 2.9 ANGSTROMS RESOLUTION
Authors
:
R. Syed, D. J. Filman, J. M. Hogle
Date
:
30 Mar 95 (Deposition) - 15 Sep 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : 0,1,2,3,4
Biol. Unit 1: 0,1,2,3,4 (60x)
Keywords
:
Virus, Icosahedral Virus
(Keyword Search:
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Reference
:
R. Syed, D. J. Filman, J. M. Hogle
Refinement Of The Sabin Strain Of Type 3 Poliovirus At 2. 4 Angstroms And The Crystal Structures Of Its Variants At 2. 9 Angstroms Resolution
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 120)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
2a: SPHINGOSINE (SPHa)
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Label:
No.
Name
Count
Type
Full Name
1
MYR
60
Ligand/Ion
MYRISTIC ACID
2
SPH
60
Ligand/Ion
SPHINGOSINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY 4:2 , ALA 4:3 , TYR 4:32
BINDING SITE FOR RESIDUE MYR 4 1
2
AC2
SOFTWARE
TYR 1:112 , VAL 1:196 , TYR 1:205 , SER 1:206 , MET 1:233 , PHE 1:238
BINDING SITE FOR RESIDUE SPH 1 1000
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SAPs(SNPs)/Variants
(2, 120)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLG_POL3L_001 (F91F, chain 3, )
2: VAR_POLG_POL3L_002 (R288R, chain 1, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_POL3L_001
*
S
431
F
POLG_POL3L
---
---
3
F
91
F
2
UniProt
VAR_POLG_POL3L_002
*
K
864
R
POLG_POL3L
---
---
1
R
288
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1pvc_1 (4:,2:)
1b: SCOP_d1pvc1_ (1:)
1c: SCOP_d1pvc3_ (3:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Poliovirus coat proteins
(20)
Poliovirus type 3, strain Sabin [TaxId: 12086]
(7)
1a
d1pvc.1
4:,2:
1b
d1pvc1_
1:
1c
d1pvc3_
3:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1pvc400 (4:2-69)
2a: CATH_1pvc300 (3:1-235)
2b: CATH_1pvc200 (2:6-271)
2c: CATH_1pvc100 (1:24-302)
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)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
Rhinovirus 14, subunit 4
(68)
Poliovirus type 3 (strains p3/leon/37 and p3/leon 12a[1]b). Organism_taxid: 12088. Strain: derived from laboratory strain p3/leon/12a(1)b placque 411.
(1)
1a
1pvc400
4:2-69
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Poliovirus type 3 (strains p3/leon/37 and p3/leon 12a[1]b). Organism_taxid: 12088. Strain: derived from laboratory strain p3/leon/12a(1)b placque 411.
(1)
2a
1pvc300
3:1-235
2b
1pvc200
2:6-271
2c
1pvc100
1:24-302
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1pvc301 (3:28-204)
1b: PFAM_Rhv_1pvc302 (3:28-204)
1c: PFAM_Rhv_1pvc303 (3:28-204)
2a: PFAM_Pico_P1A_1pvc401 (4:2-69)
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Organisms
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)
(5)
1a
Rhv-1pvc301
3:28-204
1b
Rhv-1pvc302
3:28-204
1c
Rhv-1pvc303
3:28-204
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)
(5)
2a
Pico_P1A-1pvc401
4:2-69
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Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (8.2 MB)
Header - Biol.Unit 1
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