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1PV9
Asym. Unit
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Asym.Unit (112 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
PROLIDASE FROM PYROCOCCUS FURIOSUS
Authors
:
M. J. Maher, M. Ghosh, A. M. Grunden, A. L. Menon, M. W. Adams, H. C. Freema J. M. Guss
Date
:
27 Jun 03 (Deposition) - 23 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Prolidase, Peptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Maher, M. Ghosh, A. M. Grunden, A. L. Menon, M. W. Adams, H. C. Freeman, J. M. Guss
Structure Of The Prolidase From Pyrococcus Furiosus.
Biochemistry V. 43 2771 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:220 , HIS A:284 , GLU A:313 , GLU A:327 , ZN A:402 , HOH A:502
BINDING SITE FOR RESIDUE ZN A 401
2
AC2
SOFTWARE
ASP A:209 , ASP A:220 , THR A:222 , GLU A:327 , ZN A:401 , HOH A:502
BINDING SITE FOR RESIDUE ZN A 402
3
AC3
SOFTWARE
ASP B:220 , HIS B:284 , THR B:311 , GLU B:313 , GLU B:327 , ZN B:402
BINDING SITE FOR RESIDUE ZN B 401
4
AC4
SOFTWARE
PHE B:178 , ASP B:209 , ASP B:220 , THR B:222 , GLU B:327 , ZN B:401
BINDING SITE FOR RESIDUE ZN B 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PROLINE_PEPTIDASE (A:280-292,B:280-292)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROLINE_PEPTIDASE
PS00491
Aminopeptidase P and proline dipeptidase signature.
PEPQ_PYRFU
280-292
2
A:280-292
B:280-292
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1pv9a2 (A:125-345)
1b: SCOP_d1pv9b2 (B:125-345)
2a: SCOP_d1pv9a1 (A:8-124)
2b: SCOP_d1pv9b1 (B:4-124)
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Protein Domains
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)
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Creatinase/aminopeptidase
(103)
Superfamily
:
Creatinase/aminopeptidase
(103)
Family
:
Creatinase/aminopeptidase
(99)
Protein domain
:
Aminopeptidase P, C-terminal domain
(20)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1pv9a2
A:125-345
1b
d1pv9b2
B:125-345
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Creatinase/prolidase N-terminal domain
(30)
Family
:
Creatinase/prolidase N-terminal domain
(29)
Protein domain
:
Aminopeptidase P
(20)
Pyrococcus furiosus [TaxId: 2261]
(1)
2a
d1pv9a1
A:8-124
2b
d1pv9b1
B:4-124
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1pv9B01 (B:4-122)
1b: CATH_1pv9A01 (A:8-122)
2a: CATH_1pv9A02 (A:123-345)
2b: CATH_1pv9B02 (B:123-345)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Creatine Amidinohydrolase; Chain A, domain 1
(35)
Homologous Superfamily
:
Creatine Amidinohydrolase, subunit A, domain 1
(35)
Pyrococcus furiosus. Organism_taxid: 2261.
(1)
1a
1pv9B01
B:4-122
1b
1pv9A01
A:8-122
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Creatine Amidinohydrolase
(114)
Homologous Superfamily
:
Creatinase/methionine aminopeptidase superfamily
(114)
Pyrococcus furiosus. Organism_taxid: 2261.
(1)
2a
1pv9A02
A:123-345
2b
1pv9B02
B:123-345
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Creatinase_N_1pv9B01 (B:4-124)
1b: PFAM_Creatinase_N_1pv9B02 (B:4-124)
2a: PFAM_Peptidase_M24_1pv9B03 (B:131-334)
2b: PFAM_Peptidase_M24_1pv9B04 (B:131-334)
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Clans
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Organisms
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)
Clan
:
AMP_N-like
(22)
Family
:
Creatinase_N
(11)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
Creatinase_N-1pv9B01
B:4-124
1b
Creatinase_N-1pv9B02
B:4-124
Clan
:
no clan defined [family: Peptidase_M24]
(23)
Family
:
Peptidase_M24
(23)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
2a
Peptidase_M24-1pv9B03
B:131-334
2b
Peptidase_M24-1pv9B04
B:131-334
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Asymmetric Unit 1
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