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1PS2
Asym. Unit
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Asym.Unit (281 KB)
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Models
(19 )
Title
:
HIGH RESOLUTION NMR SOLUTION STRUCTURE OF HUMAN PS2, 19 STRUCTURES
Authors
:
M. A. Williams, V. I. Polshakov, A. R. Gargaro, J. Feeney
Date
:
07 Jan 97 (Deposition) - 07 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (19 x)
Keywords
:
Growth Factor, Cell Motility, Tumor Suppressor, Trefoil Domain, Signal
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. I. Polshakov, M. A. Williams, A. R. Gargaro, T. A. Frenkiel, B. R. Westley, M. P. Chadwick, F. E. May, J. Feeney
High-Resolution Solution Structure Of Human Pnr-2/Ps2: A Single Trefoil Motif Protein.
J. Mol. Biol. V. 267 418 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_015281 (T8I, chain A, )
2: VAR_015282 (T8K, chain A, )
3: VAR_015283 (A10D, chain A, )
4: VAR_015284 (E13K, chain A, )
5: VAR_015285 (V22I, chain A, )
6: VAR_015286 (G31V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015281
T
32
I
TFF1_HUMAN
Unclassified
---
A
T
8
I
2
UniProt
VAR_015282
T
32
K
TFF1_HUMAN
Unclassified
---
A
T
8
K
3
UniProt
VAR_015283
A
34
D
TFF1_HUMAN
Unclassified
---
A
A
10
D
4
UniProt
VAR_015284
E
37
K
TFF1_HUMAN
Unclassified
---
A
E
13
K
5
UniProt
VAR_015285
V
46
I
TFF1_HUMAN
Unclassified
---
A
V
22
I
6
UniProt
VAR_015286
G
55
V
TFF1_HUMAN
Unclassified
---
A
G
31
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: P_TREFOIL_2 (A:5-48)
2: P_TREFOIL_1 (A:14-34)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P_TREFOIL_2
PS51448
P-type 'Trefoil' domain profile.
TFF1_HUMAN
29-72
1
A:5-48
2
P_TREFOIL_1
PS00025
P-type 'Trefoil' domain signature.
TFF1_HUMAN
38-58
1
A:14-34
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-5)
Exon 1.2 (A:5-56)
Exon 1.3 (A:56-60)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000291527
1
ENSE00001050346
chr21:
43786703-43786520
184
TFF1_HUMAN
1-29
29
1
A:1-5
5
1.2
ENST00000291527
2
ENSE00001050347
chr21:
43783516-43783364
153
TFF1_HUMAN
29-80
52
1
A:5-56
52
1.3
ENST00000291527
3
ENSE00001368209
chr21:
43782604-43782391
214
TFF1_HUMAN
80-84
5
1
A:56-60
5
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ps2a_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Trefoil/Plexin domain-like
(15)
Superfamily
:
Trefoil
(8)
Family
:
Trefoil
(8)
Protein domain
:
PNR-2/PS2, TFF1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ps2a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ps2A00 (A:1-60)
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Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Spasmolytic Protein; domain 1
(8)
Homologous Superfamily
:
Spasmolytic Protein, domain 1
(7)
Human (Homo sapiens)
(4)
1a
1ps2A00
A:1-60
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Trefoil_1ps2A01 (A:6-47)
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Clans
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)
Clan
:
no clan defined [family: Trefoil]
(14)
Family
:
Trefoil
(14)
Homo sapiens (Human)
(12)
1a
Trefoil-1ps2A01
A:6-47
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