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1PRX
Asym. Unit
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Asym.Unit (76 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
HORF6 A NOVEL HUMAN PEROXIDASE ENZYME
Authors
:
H. -J. Choi, S. W. Kang, C. -H. Yang, S. G. Rhee, S. -E. Ryu
Date
:
03 Apr 98 (Deposition) - 17 Jun 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Peroxiredoxin, Horf6, Hydrogen Peroxide, Redox Regulation, Cellular Signaling, Antioxidant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Choi, S. W. Kang, C. H. Yang, S. G. Rhee, S. E. Ryu
Crystal Structure Of A Novel Human Peroxidase Enzyme At 2. 0 A Resolution.
Nat. Struct. Biol. V. 5 400 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
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No.
Name
Count
Type
Full Name
1
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:5-169,B:5-169)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX6_HUMAN
5-169
2
A:5-169
B:5-169
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Exons
(5, 10)
Info
All Exons
Exon 1.1a (A:5-32 | B:2-32)
Exon 1.2b (A:32-84 | B:32-84)
Exon 1.3b (A:85-133 | B:85-133 (gaps))
Exon 1.4 (A:134-182 | B:134-182)
Exon 1.5c (A:183-224 | B:183-224)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3b
4: Boundary 1.3b/1.4
5: Boundary 1.4/1.5c
6: Boundary 1.5c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000340385
1a
ENSE00001887950
chr1:
173446405-173446631
227
PRDX6_HUMAN
1-32
32
2
A:5-32
B:2-32
28
31
1.2b
ENST00000340385
2b
ENSE00000814648
chr1:
173450465-173450621
157
PRDX6_HUMAN
32-84
53
2
A:32-84
B:32-84
53
53
1.3b
ENST00000340385
3b
ENSE00000789881
chr1:
173454500-173454646
147
PRDX6_HUMAN
85-133
49
2
A:85-133
B:85-133 (gaps)
49
49
1.4
ENST00000340385
4
ENSE00001608679
chr1:
173455394-173455540
147
PRDX6_HUMAN
134-182
49
2
A:134-182
B:134-182
49
49
1.5c
ENST00000340385
5c
ENSE00001161142
chr1:
173456874-173457946
1073
PRDX6_HUMAN
183-224
42
2
A:183-224
B:183-224
42
42
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1prxa_ (A:)
1b: SCOP_d1prxb_ (B:)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
1-Cys peroxiredoxin
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1prxa_
A:
1b
d1prxb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1prxA02 (A:156-224)
1b: CATH_1prxB02 (B:156-224)
2a: CATH_1prxB01 (B:2-155)
2b: CATH_1prxA01 (A:5-155)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antioxidant, Horf6; Chain A, domain 2
(5)
Homologous Superfamily
:
Antioxidant, Horf6; Chain A, domain2
(5)
Human (Homo sapiens)
(1)
1a
1prxA02
A:156-224
1b
1prxB02
B:156-224
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
2a
1prxB01
B:2-155
2b
1prxA01
A:5-155
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_1prxB01 (B:7-146)
1b: PFAM_AhpC_TSA_1prxB02 (B:7-146)
2a: PFAM_1_cysPrx_C_1prxB03 (B:166-205)
2b: PFAM_1_cysPrx_C_1prxB04 (B:166-205)
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Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Homo sapiens (Human)
(4)
1a
AhpC-TSA-1prxB01
B:7-146
1b
AhpC-TSA-1prxB02
B:7-146
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Homo sapiens (Human)
(4)
2a
1-cysPrx_C-1prxB03
B:166-205
2b
1-cysPrx_C-1prxB04
B:166-205
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Asymmetric Unit 1
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