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1PR9
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (158 KB)
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(1)
Title
:
HUMAN L-XYLULOSE REDUCTASE HOLOENZYME
Authors
:
O. El-Kabbani, S. Ishikura, C. Darmanin, V. Carbone, R. P. -T. Chung, N. A. Hara
Date
:
20 Jun 03 (Deposition) - 24 Feb 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Short Chain Dehydrogenase/Reductase, Dinucleotide Binding Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. El-Kabbani, S. Ishikura, C. Darmanin, V. Carbone, R. P. -T. Chung, N. Usami, A. Hara
Crystal Structure Of Human L-Xylulose Reductase Holoenzyme: Probing The Role Of Asn107 With Site-Directed Mutagenesis
Proteins V. 55 724 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: DIHYDROGENPHOSPHATE ION (2HPa)
1b: DIHYDROGENPHOSPHATE ION (2HPb)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2HP
2
Ligand/Ion
DIHYDROGENPHOSPHATE ION
2
K
2
Ligand/Ion
POTASSIUM ION
3
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
2HP A:247
BINDING SITE FOR RESIDUE K A 246
2
AC2
SOFTWARE
TYR B:149 , HOH B:459 , HOH B:462 , 2HP B:1247
BINDING SITE FOR RESIDUE K B 1246
3
AC3
SOFTWARE
GLY A:14 , GLY A:16 , LYS A:17 , GLY A:18 , ILE A:19 , SER A:38 , ARG A:39 , THR A:40 , ASP A:43 , VAL A:59 , ASP A:60 , LEU A:61 , GLY A:62 , ASN A:83 , ALA A:85 , ARG A:102 , VAL A:134 , SER A:135 , TYR A:149 , LYS A:153 , PRO A:179 , THR A:180 , VAL A:181 , VAL A:182 , THR A:184 , SER A:185 , MET A:186 , HOH A:302 , HOH A:308 , HOH A:413 , HOH A:445 , HOH A:451
BINDING SITE FOR RESIDUE NAP A 245
4
AC4
SOFTWARE
GLY B:14 , GLY B:16 , LYS B:17 , GLY B:18 , ILE B:19 , SER B:38 , ARG B:39 , THR B:40 , VAL B:59 , ASP B:60 , LEU B:61 , GLY B:62 , ASN B:83 , ALA B:85 , VAL B:106 , VAL B:134 , SER B:135 , SER B:136 , TYR B:149 , LYS B:153 , PRO B:179 , THR B:180 , VAL B:181 , VAL B:182 , THR B:184 , SER B:185 , MET B:186 , GLY B:187 , HOH B:359 , HOH B:360 , HOH B:383 , HOH B:401 , HOH B:443 , HOH B:462 , 2HP B:1247
BINDING SITE FOR RESIDUE NAP B 1245
5
AC5
SOFTWARE
SER A:136 , CYS A:138 , HIS A:146 , TYR A:149 , VAL A:181 , TRP A:191 , K A:246
BINDING SITE FOR RESIDUE 2HP A 247
6
AC6
SOFTWARE
SER B:136 , CYS B:138 , VAL B:143 , HIS B:146 , VAL B:181 , MET B:200 , HOH B:459 , NAP B:1245 , K B:1246
BINDING SITE FOR RESIDUE 2HP B 1247
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:136-164,B:136-164)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DCXR_HUMAN
136-164
2
A:136-164
B:136-164
[
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Exons
(8, 16)
Info
All Exons
Exon 1.1 (A:1-18 | B:1-18)
Exon 1.2 (A:18-50 | B:18-50)
Exon 1.3 (A:51-102 | B:51-102)
Exon 1.4 (A:102-116 | B:102-116)
Exon 1.5 (A:117-150 | B:117-150)
Exon 1.6 (A:150-171 | B:150-171)
Exon 1.7 (A:172-211 | B:172-211)
Exon 1.8 (A:211-244 | B:211-244)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000306869
1
ENSE00001155492
chr17:
79995573-79995507
67
DCXR_HUMAN
1-18
18
2
A:1-18
B:1-18
18
18
1.2
ENST00000306869
2
ENSE00001164074
chr17:
79995423-79995326
98
DCXR_HUMAN
18-50
33
2
A:18-50
B:18-50
33
33
1.3
ENST00000306869
3
ENSE00001164069
chr17:
79994889-79994735
155
DCXR_HUMAN
51-102
52
2
A:51-102
B:51-102
52
52
1.4
ENST00000306869
4
ENSE00001164064
chr17:
79994639-79994597
43
DCXR_HUMAN
102-116
15
2
A:102-116
B:102-116
15
15
1.5
ENST00000306869
5
ENSE00001164060
chr17:
79994519-79994420
100
DCXR_HUMAN
117-150
34
2
A:117-150
B:117-150
34
34
1.6
ENST00000306869
6
ENSE00001164055
chr17:
79994324-79994260
65
DCXR_HUMAN
150-171
22
2
A:150-171
B:150-171
22
22
1.7
ENST00000306869
7
ENSE00001164049
chr17:
79994184-79994067
118
DCXR_HUMAN
172-211
40
2
A:172-211
B:172-211
40
40
1.8
ENST00000306869
8
ENSE00001300238
chr17:
79993939-79993757
183
DCXR_HUMAN
211-244
34
2
A:211-244
B:211-244
34
34
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pr9a_ (A:)
1b: SCOP_d1pr9b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Carbonyl reductase
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1pr9a_
A:
1b
d1pr9b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pr9A00 (A:1-244)
1b: CATH_1pr9B00 (B:1-244)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1pr9A00
A:1-244
1b
1pr9B00
B:1-244
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_C2_1pr9B01 (B:14-242)
1b: PFAM_adh_short_C2_1pr9B02 (B:14-242)
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(
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(
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(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Homo sapiens (Human)
(7)
1a
adh_short_C2-1pr9B01
B:14-242
1b
adh_short_C2-1pr9B02
B:14-242
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