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1PQ9
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (156 KB)
Biol.Unit 4 (78 KB)
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(1)
Title
:
HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317 COMPLEX
Authors
:
M. Farnegardh, T. Bonn, S. Sun, J. Ljunggren, H. Ahola, A. Wilhelmsson, A. Gustafsson, M. Carlquist
Date
:
18 Jun 03 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,D (1x)
Keywords
:
Lxrb+T0901317 Split, Transcription Regulation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Farnegardh, T. Bonn, S. Sun, J. Ljunggren, H. Ahola, A. Wilhelmsson J. -A. Gustafsson, M. Carlquist
The Three-Dimensional Structure Of The Liver X Receptor Bet Reveals A Flexible Ligand-Binding Pocket That Can Accommodate Fundamentally Different Ligands.
J. Biol. Chem. V. 278 38821 2003
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,1,1,3,3,3-HEXAFLUORO-2-{4-[(2,2,... (44Ba)
1b: 1,1,1,3,3,3-HEXAFLUORO-2-{4-[(2,2,... (44Bb)
1c: 1,1,1,3,3,3-HEXAFLUORO-2-{4-[(2,2,... (44Bc)
1d: 1,1,1,3,3,3-HEXAFLUORO-2-{4-[(2,2,... (44Bd)
2a: BENZENESULFONIC ACID (BNSa)
2b: BENZENESULFONIC ACID (BNSb)
2c: BENZENESULFONIC ACID (BNSc)
2d: BENZENESULFONIC ACID (BNSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
44B
4
Ligand/Ion
1,1,1,3,3,3-HEXAFLUORO-2-{4-[(2,2,2-TRIFLUOROETHYL)AMINO]PHENYL}PROPAN-2-OL
2
BNS
4
Ligand/Ion
BENZENESULFONIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:271 , SER A:278 , THR A:316 , PHE A:329 , 44B A:1501
BINDING SITE FOR RESIDUE BNS A 1500
2
AC2
SOFTWARE
PHE A:268 , THR A:272 , ALA A:275 , ILE A:309 , MET A:312 , LEU A:313 , THR A:316 , LEU A:345 , PHE A:349 , ILE A:353 , HIS A:435 , GLN A:438 , LEU A:442 , LEU A:449 , LEU A:453 , TRP A:457 , BNS A:1500
BINDING SITE FOR RESIDUE 44B A 1501
3
AC3
SOFTWARE
PHE B:271 , LEU B:274 , SER B:278 , MET B:312 , THR B:316 , PHE B:329 , 44B B:2501
BINDING SITE FOR RESIDUE BNS B 2500
4
AC4
SOFTWARE
PHE B:268 , ILE B:309 , MET B:312 , LEU B:313 , THR B:316 , LEU B:345 , PHE B:349 , ILE B:353 , HIS B:435 , GLN B:438 , VAL B:439 , LEU B:442 , LEU B:449 , LEU B:453 , TRP B:457 , BNS B:2500
BINDING SITE FOR RESIDUE 44B B 2501
5
AC5
SOFTWARE
PHE C:271 , LEU C:274 , ALA C:275 , SER C:278 , PHE C:329 , 44B C:3501
BINDING SITE FOR RESIDUE BNS C 3500
6
AC6
SOFTWARE
PHE C:268 , THR C:272 , ALA C:275 , MET C:312 , LEU C:313 , THR C:316 , LEU C:345 , PHE C:349 , ILE C:353 , HIS C:435 , GLN C:438 , LEU C:442 , LEU C:449 , LEU C:453 , TRP C:457 , BNS C:3500
BINDING SITE FOR RESIDUE 44B C 3501
7
AC7
SOFTWARE
PHE D:271 , SER D:278 , MET D:312 , 44B D:4501
BINDING SITE FOR RESIDUE BNS D 4500
8
AC8
SOFTWARE
THR D:272 , ALA D:275 , ILE D:309 , MET D:312 , LEU D:313 , THR D:316 , LEU D:345 , PHE D:349 , ILE D:353 , HIS D:435 , GLN D:438 , LEU D:442 , LEU D:449 , TRP D:457 , BNS D:4500
BINDING SITE FOR RESIDUE 44B D 4501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 20)
Info
All Exons
Exon 1.6 (A:220-250 | B:219-250 | C:220-250 ...)
Exon 1.7 (A:251-310 (gaps) | B:251-310 (gaps...)
Exon 1.8 (A:311-344 | B:311-344 | C:311-344 ...)
Exon 1.9b (A:344-413 | B:344-413 | C:344-413 ...)
Exon 1.10c (A:414-458 | B:414-458 | C:414-458 ...)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9b
5: Boundary 1.9b/1.10c
6: Boundary 1.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000253727
1a
ENSE00001386247
chr19:
50879685-50879833
149
NR1H2_HUMAN
-
0
0
-
-
1.2
ENST00000253727
2
ENSE00001382965
chr19:
50879976-50880083
108
NR1H2_HUMAN
-
0
0
-
-
1.3a
ENST00000253727
3a
ENSE00001124993
chr19:
50880844-50880905
62
NR1H2_HUMAN
1-15
15
0
-
-
1.4
ENST00000253727
4
ENSE00000900338
chr19:
50880990-50881127
138
NR1H2_HUMAN
15-61
47
0
-
-
1.5
ENST00000253727
5
ENSE00000900341
chr19:
50881406-50881696
291
NR1H2_HUMAN
61-158
98
0
-
-
1.6
ENST00000253727
6
ENSE00000900344
chr19:
50881779-50882053
275
NR1H2_HUMAN
158-249
92
4
A:220-250
B:219-250
C:220-250 (gaps)
D:220-250 (gaps)
31
32
31
31
1.7
ENST00000253727
7
ENSE00000900347
chr19:
50882259-50882438
180
NR1H2_HUMAN
250-309
60
4
A:251-310 (gaps)
B:251-310 (gaps)
C:251-310 (gaps)
D:251-310 (gaps)
60
60
60
60
1.8
ENST00000253727
8
ENSE00000900350
chr19:
50883037-50883136
100
NR1H2_HUMAN
310-343
34
4
A:311-344
B:311-344
C:311-344
D:311-344 (gaps)
34
34
34
34
1.9b
ENST00000253727
9b
ENSE00000900352
chr19:
50885223-50885431
209
NR1H2_HUMAN
343-412
70
4
A:344-413
B:344-413
C:344-413
D:344-413
70
70
70
70
1.10c
ENST00000253727
10c
ENSE00001124989
chr19:
50885713-50886266
554
NR1H2_HUMAN
413-460
48
4
A:414-458
B:414-458
C:414-458
D:414-458 (gaps)
45
45
45
45
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1pq9a_ (A:)
1b: SCOP_d1pq9b_ (B:)
1c: SCOP_d1pq9c_ (C:)
1d: SCOP_d1pq9d_ (D:)
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Oxysterols receptor LXR-beta
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1pq9a_
A:
1b
d1pq9b_
B:
1c
d1pq9c_
C:
1d
d1pq9d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1pq9B00 (B:219-458)
1b: CATH_1pq9A00 (A:220-458)
1c: CATH_1pq9C00 (C:220-458)
1d: CATH_1pq9D00 (D:220-458)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1pq9B00
B:219-458
1b
1pq9A00
A:220-458
1c
1pq9C00
C:220-458
1d
1pq9D00
D:220-458
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1pq9D01 (D:260-449)
1b: PFAM_Hormone_recep_1pq9D02 (D:260-449)
1c: PFAM_Hormone_recep_1pq9D03 (D:260-449)
1d: PFAM_Hormone_recep_1pq9D04 (D:260-449)
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Clans
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1pq9D01
D:260-449
1b
Hormone_recep-1pq9D02
D:260-449
1c
Hormone_recep-1pq9D03
D:260-449
1d
Hormone_recep-1pq9D04
D:260-449
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