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Getting 'Biological Unit' information from database.
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1PQ3
Biol. Unit 1
Info
Asym.Unit (302 KB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (150 KB)
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(1)
Title
:
HUMAN ARGINASE II: CRYSTAL STRUCTURE AND PHYSIOLOGICAL ROLE IN MALE AND FEMALE SEXUAL AROUSAL
Authors
:
E. Cama, D. M. Colleluori, F. A. Emig, H. Shin, S. W. Kim, N. N. Kim, A. M. Tr D. E. Ash, D. W. Christianson
Date
:
17 Jun 03 (Deposition) - 12 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Biosynthetic Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Cama, D. M. Colleluori, F. A. Emig, H. Shin, S. W. Kim, N. N. Kim, A. M. Traish, D. E. Ash, D. W. Christianson
Human Arginase Ii: Crystal Structure And Physiological Role In Male And Female Sexual Arousal
Biochemistry V. 42 8445 2003
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
3a: S-2-(BORONOETHYL)-L-CYSTEINE (S2Ca)
3b: S-2-(BORONOETHYL)-L-CYSTEINE (S2Cb)
3c: S-2-(BORONOETHYL)-L-CYSTEINE (S2Cc)
3d: S-2-(BORONOETHYL)-L-CYSTEINE (S2Cd)
3e: S-2-(BORONOETHYL)-L-CYSTEINE (S2Ce)
3f: S-2-(BORONOETHYL)-L-CYSTEINE (S2Cf)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
S2C
3
Ligand/Ion
S-2-(BORONOETHYL)-L-CYSTEINE
4
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
16: DC5 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:220 , ARG A:224
BINDING SITE FOR RESIDUE SO4 A 3070
02
AC4
SOFTWARE
ARG A:224 , ARG A:233
BINDING SITE FOR RESIDUE SO4 A 3073
03
AC6
SOFTWARE
ARG C:220 , ARG C:224
BINDING SITE FOR RESIDUE SO4 C 3075
04
AC8
SOFTWARE
PRO C:179 , GLY C:180 , PHE C:181 , SER C:182
BINDING SITE FOR RESIDUE SO4 C 3078
05
BC2
SOFTWARE
ARG A:90 , PRO A:179
BINDING SITE FOR RESIDUE SO4 A 3081
06
BC3
SOFTWARE
GLY A:180 , PHE A:181 , SER A:182
BINDING SITE FOR RESIDUE SO4 A 3082
07
BC6
SOFTWARE
SER B:189 , SER B:192 , ARG B:242 , ARG B:244
BINDING SITE FOR RESIDUE SO4 B 3085
08
BC7
SOFTWARE
HIS A:120 , ASP A:143 , ASP A:147 , ASP A:251 , MN A:501 , S2C A:551
BINDING SITE FOR RESIDUE MN A 500
09
BC8
SOFTWARE
ASP A:143 , HIS A:145 , ASP A:251 , ASP A:253 , MN A:500 , S2C A:551
BINDING SITE FOR RESIDUE MN A 501
10
BC9
SOFTWARE
HIS B:120 , ASP B:143 , ASP B:147 , ASP B:251 , MN B:503 , S2C B:552
BINDING SITE FOR RESIDUE MN B 502
11
CC1
SOFTWARE
ASP B:143 , HIS B:145 , ASP B:251 , ASP B:253 , MN B:502 , S2C B:552
BINDING SITE FOR RESIDUE MN B 503
12
CC2
SOFTWARE
ASP C:143 , HIS C:145 , ASP C:251 , ASP C:253 , MN C:505 , S2C C:553
BINDING SITE FOR RESIDUE MN C 504
13
CC3
SOFTWARE
HIS C:120 , ASP C:143 , ASP C:147 , ASP C:251 , MN C:504 , S2C C:553
BINDING SITE FOR RESIDUE MN C 505
14
DC2
SOFTWARE
ARG C:50 , GLU C:51 , GLY C:53 , HOH C:939
BINDING SITE FOR RESIDUE CL A 601
15
DC3
SOFTWARE
GLN C:243
BINDING SITE FOR RESIDUE CL C 602
16
DC5
SOFTWARE
HIS A:120 , ASP A:143 , HIS A:145 , ASP A:147 , ASN A:149 , SER A:156 , HIS A:160 , GLY A:161 , ASP A:202 , ASP A:251 , ASP A:253 , GLU A:296 , MN A:500 , MN A:501 , HOH A:917 , HOH A:918 , HOH A:925 , HOH A:1076 , HOH A:1205
BINDING SITE FOR RESIDUE S2C A 551
17
DC6
SOFTWARE
HIS B:120 , ASP B:143 , HIS B:145 , ASP B:147 , ASN B:149 , SER B:156 , HIS B:160 , GLY B:161 , ASP B:202 , ASP B:251 , ASP B:253 , THR B:265 , GLU B:296 , MN B:502 , MN B:503 , HOH B:920 , HOH B:921 , HOH B:999
BINDING SITE FOR RESIDUE S2C B 552
18
DC7
SOFTWARE
HIS C:120 , ASP C:143 , HIS C:145 , ASP C:147 , ASN C:149 , THR C:154 , SER C:156 , HIS C:160 , ASP C:202 , ASP C:251 , ASP C:253 , THR C:265 , GLU C:296 , MN C:504 , MN C:505 , HOH C:922 , HOH C:923 , HOH C:1077 , HOH C:1147
BINDING SITE FOR RESIDUE S2C C 553
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_033520 (G240R, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033520
G
240
R
ARGI2_HUMAN
Polymorphism
17104534
A/B/C
G
240
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:249-270,B:249-270,C:249-270)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI2_HUMAN
249-270
3
A:249-270
B:249-270
C:249-270
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1pq3a_ (A:)
1b: SCOP_d1pq3b_ (B:)
1c: SCOP_d1pq3c_ (C:)
1d: SCOP_d1pq3d_ (D:)
1e: SCOP_d1pq3e_ (E:)
1f: SCOP_d1pq3f_ (F:)
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]
(7)
1a
d1pq3a_
A:
1b
d1pq3b_
B:
1c
d1pq3c_
C:
1d
d1pq3d_
D:
1e
d1pq3e_
E:
1f
d1pq3f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1pq3A00 (A:24-329)
1b: CATH_1pq3B00 (B:24-329)
1c: CATH_1pq3C00 (C:24-329)
1d: CATH_1pq3D00 (D:24-329)
1e: CATH_1pq3E00 (E:24-329)
1f: CATH_1pq3F00 (F:24-329)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Human (Homo sapiens)
(15)
1a
1pq3A00
A:24-329
1b
1pq3B00
B:24-329
1c
1pq3C00
C:24-329
1d
1pq3D00
D:24-329
1e
1pq3E00
E:24-329
1f
1pq3F00
F:24-329
[
close CATH info
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Arginase_1pq3F01 (F:24-324)
1b: PFAM_Arginase_1pq3F02 (F:24-324)
1c: PFAM_Arginase_1pq3F03 (F:24-324)
1d: PFAM_Arginase_1pq3F04 (F:24-324)
1e: PFAM_Arginase_1pq3F05 (F:24-324)
1f: PFAM_Arginase_1pq3F06 (F:24-324)
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Clans
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)
Organisms
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)
(
)
Clan
:
Arginase
(56)
Family
:
Arginase
(37)
Homo sapiens (Human)
(11)
1a
Arginase-1pq3F01
F:24-324
1b
Arginase-1pq3F02
F:24-324
1c
Arginase-1pq3F03
F:24-324
1d
Arginase-1pq3F04
F:24-324
1e
Arginase-1pq3F05
F:24-324
1f
Arginase-1pq3F06
F:24-324
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Chain C
Asymmetric Unit 1
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Asym.Unit (302 KB)
Header - Asym.Unit
Biol.Unit 1 (151 KB)
Header - Biol.Unit 1
Biol.Unit 2 (150 KB)
Header - Biol.Unit 2
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