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Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (38 KB)
Biol.Unit 4 (37 KB)
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(1)
Title
:
VOLVATOXIN A2 IN MONOCLINIC CRYSTAL
Authors
:
S. -C. Lin, Y. -C. Lo, J. -Y. Lin, Y. -C. Liaw
Date
:
16 Jun 03 (Deposition) - 24 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.42
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Volvatoxin A2, Ingot Crystal Form
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. -C. Lin, Y. -C. Lo, J. -Y. Lin, Y. -C. Liaw
Crystal Structures And Electron Micrographs Of Fungal Volvatoxin A2
J. Mol. Biol. V. 343 477 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 13)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
13
Ligand/Ion
ACETIC ACID
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE D:3163 , GLU D:3164 , GLU D:3165 , HOH D:5049
BINDING SITE FOR RESIDUE ACY D 4001
02
AC2
SOFTWARE
LYS B:1047 , ASP B:1051 , PHE B:1060 , HOH B:5660
BINDING SITE FOR RESIDUE ACY B 4002
03
AC3
SOFTWARE
LYS A:47 , ASP A:51 , PHE A:60
BINDING SITE FOR RESIDUE ACY A 4003
04
AC4
SOFTWARE
GLN A:8 , HOH A:5043 , HOH A:5321
BINDING SITE FOR RESIDUE ACY A 4004
05
AC5
SOFTWARE
TYR A:40 , ASN A:122 , SER A:131 , LEU A:158 , HOH A:5069 , HOH A:5677
BINDING SITE FOR RESIDUE ACY A 4005
06
AC6
SOFTWARE
LYS C:2047 , ASP C:2051 , PHE C:2060 , HOH C:5525
BINDING SITE FOR RESIDUE ACY C 4006
07
AC7
SOFTWARE
VAL B:1093 , VAL B:1094 , ASP B:1095 , ACY B:4008
BINDING SITE FOR RESIDUE ACY B 4007
08
AC8
SOFTWARE
VAL B:1010 , ACY B:4007
BINDING SITE FOR RESIDUE ACY B 4008
09
AC9
SOFTWARE
LYS D:3047 , ASP D:3051 , PHE D:3060 , HOH D:5483
BINDING SITE FOR RESIDUE ACY D 4009
10
BC1
SOFTWARE
VAL D:3010 , GLN D:3012 , HOH D:5206
BINDING SITE FOR RESIDUE ACY D 4010
11
BC2
SOFTWARE
VAL A:10 , GLN A:12 , PHE A:138 , SER A:139 , VAL A:140 , HOH A:5170
BINDING SITE FOR RESIDUE ACY A 4011
12
BC3
SOFTWARE
ILE A:163 , GLU A:164 , HOH A:5100 , HOH A:5194
BINDING SITE FOR RESIDUE ACY A 4012
13
BC4
SOFTWARE
GLN D:3008 , LYS D:3098 , ILE D:3102
BINDING SITE FOR RESIDUE ACY D 4013
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1pp0a_ (A:)
1b: SCOP_d1pp0b_ (B:)
1c: SCOP_d1pp0c_ (C:)
1d: SCOP_d1pp0d_ (D:)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CytB endotoxin-like
(5)
Superfamily
:
CytB endotoxin-like
(5)
Family
:
CytB endotoxin-like
(5)
Protein domain
:
Volvatoxin A2
(4)
Volvariella volvacea, different isoforms [TaxId: 36659]
(4)
1a
d1pp0a_
A:
1b
d1pp0b_
B:
1c
d1pp0c_
C:
1d
d1pp0d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1pp0B00 (B:1005-1198)
1b: CATH_1pp0C00 (C:2005-2198)
1c: CATH_1pp0A00 (A:5-198)
1d: CATH_1pp0D00 (D:3005-3198)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Delta-endotoxin CytB
(5)
Homologous Superfamily
:
Delta-endotoxin Cytb
(5)
Volvariella volvacea. Organism_taxid: 36659
(4)
1a
1pp0B00
B:1005-1198
1b
1pp0C00
C:2005-2198
1c
1pp0A00
A:5-198
1d
1pp0D00
D:3005-3198
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Bac_thur_toxin_1pp0D01 (D:3033-3193)
1b: PFAM_Bac_thur_toxin_1pp0D02 (D:3033-3193)
1c: PFAM_Bac_thur_toxin_1pp0D03 (D:3033-3193)
1d: PFAM_Bac_thur_toxin_1pp0D04 (D:3033-3193)
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Clans
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)
(
)
Clan
:
no clan defined [family: Bac_thur_toxin]
(5)
Family
:
Bac_thur_toxin
(5)
Volvariella volvacea
(4)
1a
Bac_thur_toxin-1pp0D01
D:3033-3193
1b
Bac_thur_toxin-1pp0D02
D:3033-3193
1c
Bac_thur_toxin-1pp0D03
D:3033-3193
1d
Bac_thur_toxin-1pp0D04
D:3033-3193
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (37 KB)
Header - Biol.Unit 1
Biol.Unit 2 (38 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
Biol.Unit 4 (37 KB)
Header - Biol.Unit 4
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