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1POW
Asym. Unit
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Asym.Unit (194 KB)
Biol.Unit 1 (372 KB)
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(1)
Title
:
THE REFINED STRUCTURES OF A STABILIZED MUTANT AND OF WILD-TYPE PYRUVATE OXIDASE FROM LACTOBACILLUS PLANTARUM
Authors
:
Y. A. Muller, G. E. Schulz
Date
:
09 Nov 93 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Oxidoreductase(Oxygen As Acceptor)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. A. Muller, G. Schumacher, R. Rudolph, G. E. Schulz
The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum.
J. Mol. Biol. V. 237 315 1994
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: THIAMINE DIPHOSPHATE (TPPa)
3b: THIAMINE DIPHOSPHATE (TPPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
TPP
2
Ligand/Ion
THIAMINE DIPHOSPHATE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:447 , ASN A:474 , GLN A:476 , TPP A:611
BINDING SITE FOR RESIDUE MG A 610
2
AC2
SOFTWARE
ASP B:447 , ASN B:474 , GLN B:476 , TPP B:611
BINDING SITE FOR RESIDUE MG B 610
3
AC3
SOFTWARE
PRO A:33 , GLU A:59 , SER A:82 , PRO A:85 , HIS A:89 , GLN A:122 , ASP A:396 , ALA A:420 , MET A:422 , ASP A:447 , GLY A:448 , GLY A:449 , ASN A:474 , GLN A:476 , TYR A:477 , GLY A:478 , PHE A:479 , ILE A:480 , MG A:610 , HOH A:617 , HOH A:659 , HOH A:664
BINDING SITE FOR RESIDUE TPP A 611
4
AC4
SOFTWARE
HIS A:101 , PHE A:121 , GLY A:220 , ILE A:221 , GLY A:222 , THR A:244 , TYR A:245 , ALA A:262 , ASN A:263 , ARG A:264 , VAL A:265 , GLY A:284 , ASN A:285 , ASN A:286 , TYR A:287 , PRO A:288 , PHE A:289 , ASP A:306 , ILE A:307 , LYS A:311 , ASP A:325 , ALA A:326 , ASN A:398 , SER A:416 , ASN A:417 , HOH A:614 , HOH A:635
BINDING SITE FOR RESIDUE FAD A 612
5
AC5
SOFTWARE
PRO B:33 , GLU B:59 , SER B:82 , PRO B:85 , HIS B:89 , GLN B:122 , ASP B:396 , ALA B:420 , MET B:422 , GLY B:446 , ASP B:447 , GLY B:448 , GLY B:449 , MET B:452 , ASN B:474 , GLN B:476 , TYR B:477 , GLY B:478 , PHE B:479 , ILE B:480 , MG B:610 , HOH B:635 , HOH B:651 , HOH B:662
BINDING SITE FOR RESIDUE TPP B 611
6
AC6
SOFTWARE
HIS B:101 , PHE B:121 , GLY B:220 , ILE B:221 , GLY B:222 , THR B:244 , TYR B:245 , PRO B:246 , ALA B:262 , ASN B:263 , ARG B:264 , VAL B:265 , GLY B:284 , ASN B:285 , ASN B:286 , TYR B:287 , PRO B:288 , PHE B:289 , ASP B:306 , ILE B:307 , LYS B:311 , ASP B:325 , ALA B:326 , ASN B:398 , SER B:416 , ASN B:417 , HOH B:640
BINDING SITE FOR RESIDUE FAD B 612
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TPP_ENZYMES (A:430-449,B:430-449)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPP_ENZYMES
PS00187
Thiamine pyrophosphate enzymes signature.
POXB_LACPL
430-449
2
A:430-449
B:430-449
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1powa1 (A:183-365)
1b: SCOP_d1powb1 (B:183-365)
2a: SCOP_d1powa3 (A:366-593)
2b: SCOP_d1powb3 (B:366-593)
3a: SCOP_d1powa2 (A:9-182)
3b: SCOP_d1powb2 (B:9-182)
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(
)
(
)
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)
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)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Pyruvate oxidase and decarboxylase, middle domain
(74)
Protein domain
:
Pyruvate oxidase
(10)
Lactobacillus plantarum [TaxId: 1590]
(8)
1a
d1powa1
A:183-365
1b
d1powb1
B:183-365
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
Pyruvate oxidase and decarboxylase PP module
(43)
Protein domain
:
Pyruvate oxidase
(4)
Lactobacillus plantarum [TaxId: 1590]
(2)
2a
d1powa3
A:366-593
2b
d1powb3
B:366-593
Family
:
Pyruvate oxidase and decarboxylase Pyr module
(43)
Protein domain
:
Pyruvate oxidase
(4)
Lactobacillus plantarum [TaxId: 1590]
(2)
3a
d1powa2
A:9-182
3b
d1powb2
B:9-182
[
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]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1powA03 (A:360-549)
1b: CATH_1powB03 (B:360-549)
1c: CATH_1powA01 (A:9-192)
1d: CATH_1powB01 (B:9-192)
2a: CATH_1powA02 (A:193-359)
2b: CATH_1powB02 (B:193-359)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Lactobacillus plantarum. Organism_taxid: 1590
(2)
1a
1powA03
A:360-549
1b
1powB03
B:360-549
1c
1powA01
A:9-192
1d
1powB01
B:9-192
Homologous Superfamily
:
TPP-binding domain
(120)
Lactobacillus plantarum. Organism_taxid: 1590
(2)
2a
1powA02
A:193-359
2b
1powB02
B:193-359
[
close CATH info
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_TPP_enzyme_M_1powB01 (B:202-333)
1b: PFAM_TPP_enzyme_M_1powB02 (B:202-333)
2a: PFAM_TPP_enzyme_C_1powB03 (B:393-542)
2b: PFAM_TPP_enzyme_C_1powB04 (B:393-542)
3a: PFAM_TPP_enzyme_N_1powB05 (B:11-181)
3b: PFAM_TPP_enzyme_N_1powB06 (B:11-181)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD_DHS
(82)
Family
:
TPP_enzyme_M
(50)
Lactobacillus plantarum
(3)
1a
TPP_enzyme_M-1powB01
B:202-333
1b
TPP_enzyme_M-1powB02
B:202-333
Clan
:
THDP-binding
(106)
Family
:
TPP_enzyme_C
(54)
Lactobacillus plantarum
(3)
2a
TPP_enzyme_C-1powB03
B:393-542
2b
TPP_enzyme_C-1powB04
B:393-542
Family
:
TPP_enzyme_N
(54)
Lactobacillus plantarum
(3)
3a
TPP_enzyme_N-1powB05
B:11-181
3b
TPP_enzyme_N-1powB06
B:11-181
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