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1POE
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
STRUCTURES OF FREE AND INHIBITED HUMAN SECRETORY PHOSPHOLIPASE A2 FROM INFLAMMATORY EXUDATE
Authors
:
D. L. Scott, S. P. White, P. B. Sigler
Date
:
07 Sep 92 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. L. Scott, S. P. White, J. L. Browning, J. J. Rosa, M. H. Gelb, P. B. Sigler
Structures Of Free And Inhibited Human Secretory Phospholipase A2 From Inflammatory Exudate.
Science V. 254 1007 1991
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GL... (GELa)
2b: 1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GL... (GELb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GEL
2
Ligand/Ion
1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: CA1 (UNKNOWN)
08: CA2 (UNKNOWN)
09: CA3 (UNKNOWN)
10: CA4 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:27 , GLY A:29 , GLY A:31 , ASP A:48 , GEL A:930
BINDING SITE FOR RESIDUE CA A 801
02
AC2
SOFTWARE
HIS B:27 , GLY B:29 , GLY B:31 , ASP B:48 , GEL B:935
BINDING SITE FOR RESIDUE CA B 802
03
AC3
SOFTWARE
PHE A:23 , GLY A:25 , TYR A:112 , ASN A:114 , HOH A:535 , HOH A:669
BINDING SITE FOR RESIDUE CA A 803
04
AC4
SOFTWARE
PHE B:23 , GLY B:25 , TYR B:112 , ASN B:114 , HOH B:563
BINDING SITE FOR RESIDUE CA B 804
05
AC5
SOFTWARE
LEU A:2 , ALA A:17 , TYR A:21 , HIS A:27 , CYS A:28 , GLY A:29 , GLY A:31 , CYS A:44 , HIS A:47 , ASP A:48 , TYR A:51 , GLU A:55 , LYS A:62 , HOH A:442 , HOH A:455 , HOH A:536 , HOH A:656 , CA A:801
BINDING SITE FOR RESIDUE GEL A 930
06
AC6
SOFTWARE
LEU B:2 , HIS B:6 , ALA B:17 , HIS B:27 , CYS B:28 , GLY B:29 , VAL B:30 , GLY B:31 , CYS B:44 , HIS B:47 , ASP B:48 , LYS B:62 , HOH B:499 , HOH B:557 , CA B:802
BINDING SITE FOR RESIDUE GEL B 935
07
CA1
UNKNOWN
HIS A:27 , GLY A:29 , GLY A:31 , ASP A:48
NULL
08
CA2
UNKNOWN
PHE A:23 , GLY A:25 , TYR A:112 , ASN A:114
NULL
09
CA3
UNKNOWN
HIS B:27 , GLY B:29 , GLY B:31 , ASP B:48
NULL
10
CA4
UNKNOWN
PHE B:23 , GLY B:25 , TYR B:112 , ASN B:114
NULL
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:43-50,B:43-50)
2: PA2_ASP (A:87-97,B:87-97)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2GA_HUMAN
63-70
2
A:43-50
B:43-50
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2GA_HUMAN
107-117
2
A:87-97
B:87-97
[
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Exons
(3, 6)
Info
All Exons
Exon 1.3e (A:1-42 | B:1-42)
Exon 1.3g (A:42-78 | B:42-78)
Exon 1.4d (A:78-124 | B:78-124)
View:
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All Exon Boundaries
1: Boundary 1.3c/1.3e
2: Boundary 1.3e/1.3g
3: Boundary 1.3g/1.4d
4: Boundary 1.4d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000400520
2c
ENSE00001543334
chr1:
20306111-20306073
39
PA2GA_HUMAN
-
0
0
-
-
1.3c
ENST00000400520
3c
ENSE00002182826
chr1:
20305372-20305227
146
PA2GA_HUMAN
1-14
14
0
-
-
1.3e
ENST00000400520
3e
ENSE00001326822
chr1:
20305017-20304873
145
PA2GA_HUMAN
14-62
49
2
A:1-42
B:1-42
42
42
1.3g
ENST00000400520
3g
ENSE00000873019
chr1:
20304614-20304508
107
PA2GA_HUMAN
62-98
37
2
A:42-78
B:42-78
37
37
1.4d
ENST00000400520
4d
ENSE00001543318
chr1:
20302336-20301929
408
PA2GA_HUMAN
98-144
47
2
A:78-124
B:78-124
47
47
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1poea_ (A:)
1b: SCOP_d1poeb_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
Phospholipase A2
(72)
Human (Homo sapiens), synovial fluid [TaxId: 9606]
(16)
1a
d1poea_
A:
1b
d1poeb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1poeA00 (A:1-124)
1b: CATH_1poeB00 (B:1-124)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Human (Homo sapiens)
(15)
1a
1poeA00
A:1-124
1b
1poeB00
B:1-124
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Phospholip_A2_1_1poeB01 (B:1-120)
1b: PFAM_Phospholip_A2_1_1poeB02 (B:1-120)
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(
)
Clan
:
no clan defined [family: Phospholip_A2_1]
(33)
Family
:
Phospholip_A2_1
(33)
Homo sapiens (Human)
(8)
1a
Phospholip_A2_1-1poeB01
B:1-120
1b
Phospholip_A2_1-1poeB02
B:1-120
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Asymmetric Unit 1
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