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1PO5
Biol. Unit 2
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Asym.Unit (89 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (164 KB)
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(1)
Title
:
STRUCTURE OF MAMMALIAN CYTOCHROME P450 2B4
Authors
:
E. E. Scott, Y. A. He, M. R. Wester, M. A. White, C. C. Chin, J. R. Halpert, E. F. Johnson, C. D. Stout
Date
:
13 Jun 03 (Deposition) - 07 Oct 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Oxidoreductase, Membrane Protein, Cyp 2B4, Cyp Lm2, Cytochrome P450, Monooxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. E. Scott, Y. A. He, M. R. Wester, M. A. White, C. C. Chin, J. R. Halpert, E. F. Johnson, C. D. Stout
An Open Conformation Of Mammalian Cytochrome P450 2B4 At 1. A Resolution
Proc. Natl. Acad. Sci. Usa V. 100 13196 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
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Label:
No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:98 , HIS A:226 , PHE A:227 , ALA A:298 , GLY A:299 , THR A:302 , THR A:303 , THR A:306 , GLN A:357 , VAL A:367 , HIS A:369 , LEU A:392 , PRO A:428 , PHE A:429 , SER A:430 , ARG A:434 , CYS A:436 , GLY A:438 , HOH A:9028 , HOH A:9033 , HOH A:9080
BINDING SITE FOR RESIDUE HEM A 500
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_CP2B4_RABIT_001 (V39I, chain A, )
2: VAR_CP2B4_RABIT_002 (I174V, chain A, )
3: VAR_CP2B4_RABIT_003 (L290I, chain A, )
4: VAR_CP2B4_RABIT_004 (M314L, chain A, )
5: VAR_CP2B4_RABIT_005 (L420M, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CP2B4_RABIT_001
*
V
39
I
CP2B4_RABIT
---
---
A
V
39
I
2
UniProt
VAR_CP2B4_RABIT_002
*
I
174
V
CP2B4_RABIT
---
---
A
I
174
V
3
UniProt
VAR_CP2B4_RABIT_003
*
L
290
I
CP2B4_RABIT
---
---
A
L
290
I
4
UniProt
VAR_CP2B4_RABIT_004
*
M
314
L
CP2B4_RABIT
---
---
A
M
314
L
5
UniProt
VAR_CP2B4_RABIT_005
*
L
420
M
CP2B4_RABIT
---
---
A
L
420
M
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:429-438)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2B4_RABIT
429-438
2
A:429-438
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1po5a_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Mammalian cytochrome p450 2b4
(10)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(10)
1a
d1po5a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1po5A00 (A:28-492)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Rabbit (Oryctolagus cuniculus)
(7)
1a
1po5A00
A:28-492
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_p450_1po5A01 (A:31-488)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: p450]
(161)
Family
:
p450
(161)
Oryctolagus cuniculus (Rabbit)
(10)
1a
p450-1po5A01
A:31-488
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Asym.Unit (89 KB)
Header - Asym.Unit
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