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1PN4
Asym. Unit
Info
Asym.Unit (189 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2-ENOYL-COA HYDRATASE 2 DOMAIN OF CANDIDA TROPICALIS MULTIFUNCTIONAL ENZYME TYPE 2 COMPLEXED WITH (3R)-HYDROXYDECANOYL-COA.
Authors
:
M. K. Koski, A. M. Haapalainen, J. K. Hiltunen, T. Glumoff
Date
:
12 Jun 03 (Deposition) - 13 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hot-Dog Fold, Hydratase 2 Motif, Oxyanion Hole, Enzyme- Product Complex, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. K. Koski, A. M. Haapalainen, J. K. Hiltunen, T. Glumoff
A Two-Domain Structure Of One Subunit Explains Unique Features Of Eukaryotic Hydratase 2.
J. Biol. Chem. V. 279 24666 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
2a: 3R-HYDROXYDECANOYL-COENZYME A (HDCa)
2b: 3R-HYDROXYDECANOYL-COENZYME A (HDCb)
2c: 3R-HYDROXYDECANOYL-COENZYME A (HDCc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
HDC
3
Ligand/Ion
3R-HYDROXYDECANOYL-COENZYME A
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:57 , LEU A:71 , LEU A:72 , HIS A:73 , GLY A:74 , LYS A:103 , TYR A:131 , PHE A:132 , ASP A:182 , ASN A:184 , GLN A:187 , HIS A:204 , GLY A:205 , ARG A:229 , PHE A:230 , THR A:231 , GLY A:232 , ILE A:233 , EDO A:504 , HOH A:1278 , HOH A:1336 , HOH A:1408
BINDING SITE FOR RESIDUE HDC A 1277
2
AC2
SOFTWARE
THR B:49 , GLN B:56 , ASN B:57 , LEU B:71 , HIS B:73 , GLY B:74 , GLU B:75 , LYS B:103 , TYR B:131 , PHE B:132 , ASP B:182 , ASN B:184 , GLN B:187 , ILE B:202 , HIS B:204 , GLY B:205 , ARG B:229 , PHE B:230 , THR B:231 , GLY B:232 , ILE B:233 , EDO B:501 , HOH B:2304 , HOH B:2306 , HOH B:2406 , HOH B:2407
BINDING SITE FOR RESIDUE HDC B 2277
3
AC3
SOFTWARE
HIS D:73 , GLY D:74 , GLU D:75 , LYS D:103 , VAL D:108 , PHE D:132 , ASP D:182 , ASN D:184 , GLN D:187 , GLY D:205 , ARG D:229 , PHE D:230 , THR D:231 , GLY D:232 , ILE D:233 , HOH D:3283 , HOH D:3299
BINDING SITE FOR RESIDUE HDC D 3277
4
AC4
SOFTWARE
PRO B:68 , ASN B:184 , HDC B:2277 , HOH B:2295 , HOH B:2316
BINDING SITE FOR RESIDUE EDO B 501
5
AC5
SOFTWARE
GLU B:75 , THR B:151 , ASN B:152 , GLN B:153 , LYS B:227
BINDING SITE FOR RESIDUE EDO B 502
6
AC6
SOFTWARE
GLN B:56 , ASN B:57
BINDING SITE FOR RESIDUE EDO B 503
7
AC7
SOFTWARE
PRO A:68 , ASN A:184 , HDC A:1277 , HOH A:1311 , HOH A:1339
BINDING SITE FOR RESIDUE EDO A 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1pn4a1 (A:5-151)
1b: SCOP_d1pn4b1 (B:5-151)
1c: SCOP_d1pn4b2 (B:152-276)
1d: SCOP_d1pn4c1 (C:4-151)
1e: SCOP_d1pn4c2 (C:152-274)
1f: SCOP_d1pn4d1 (D:4-151)
1g: SCOP_d1pn4d2 (D:152-276)
1h: SCOP_d1pn4a2 (A:152-276)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thioesterase/thiol ester dehydrase-isomerase
(151)
Superfamily
:
Thioesterase/thiol ester dehydrase-isomerase
(151)
Family
:
MaoC-like
(9)
Protein domain
:
2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase
(3)
Yeast (Candida tropicalis) [TaxId: 5482]
(2)
1a
d1pn4a1
A:5-151
1b
d1pn4b1
B:5-151
1c
d1pn4b2
B:152-276
1d
d1pn4c1
C:4-151
1e
d1pn4c2
C:152-274
1f
d1pn4d1
D:4-151
1g
d1pn4d2
D:152-276
1h
d1pn4a2
A:152-276
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1pn4A01 (A:5-152)
1b: CATH_1pn4A02 (A:153-276)
1c: CATH_1pn4B02 (B:153-276)
1d: CATH_1pn4D02 (D:153-276)
1e: CATH_1pn4C02 (C:153-274)
1f: CATH_1pn4B01 (B:5-152)
1g: CATH_1pn4D01 (D:4-152)
1h: CATH_1pn4C01 (C:4-152)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Thiol Ester Dehydrase; Chain A
(90)
Homologous Superfamily
:
[code=3.10.129.10, no name defined]
(90)
Candida tropicalis. Organism_taxid: 5482.
(2)
1a
1pn4A01
A:5-152
1b
1pn4A02
A:153-276
1c
1pn4B02
B:153-276
1d
1pn4D02
D:153-276
1e
1pn4C02
C:153-274
1f
1pn4B01
B:5-152
1g
1pn4D01
D:4-152
1h
1pn4C01
C:4-152
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_MaoC_dehydratas_1pn4D01 (D:152-269)
1b: PFAM_MaoC_dehydratas_1pn4D02 (D:152-269)
1c: PFAM_MaoC_dehydratas_1pn4D03 (D:152-269)
1d: PFAM_MaoC_dehydratas_1pn4D04 (D:152-269)
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Clan
:
HotDog
(52)
Family
:
MaoC_dehydratas
(6)
Candida tropicalis (Yeast)
(1)
1a
MaoC_dehydratas-1pn4D01
D:152-269
1b
MaoC_dehydratas-1pn4D02
D:152-269
1c
MaoC_dehydratas-1pn4D03
D:152-269
1d
MaoC_dehydratas-1pn4D04
D:152-269
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Asym.Unit (189 KB)
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