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1PLO
Asym. Unit
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Asym.Unit (314 KB)
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Models
(10 )
Title
:
TRANSFORMING GROWTH FACTOR-BETA TYPE II RECEPTOR EXTRACELLULAR DOMAIN
Authors
:
S. Deep, K. P. Walker Iii, Z. Shu, A. P. Hinck
Date
:
08 Jun 03 (Deposition) - 23 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Three-Finger Toxin Fold, Cytokine Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Deep, K. P. Walker Iii, Z. Shu, A. P. Hinck
Solution Structure And Backbone Dynamics Of The Tgf-Beta Type Ii Receptor Extracellular Domain
Biochemistry V. 42 10126 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_041414 (C38R, chain A, )
2: VAR_036070 (I50V, chain A, )
3: VAR_TGFR2_HUMAN_CCDS2648_1_01 (I50V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041414
C
61
R
TGFR2_HUMAN
Unclassified
---
A
C
38
R
2
UniProt
VAR_036070
I
73
V
TGFR2_HUMAN
Unclassified
---
A
I
50
V
3
CancerSNP
VAR_TGFR2_HUMAN_CCDS2648_1_01
*
I
73
V
TGFR2_HUMAN
Disease (Colorectal cancer)
---
A
I
50
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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End label:
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Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:15-65)
Exon 1.4 (A:65-129)
Exon 1.6b (A:129-136)
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.6b
4: Boundary 1.6b/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000295754
1a
ENSE00001359542
chr3:
30647994-30648469
476
TGFR2_HUMAN
1-32
32
0
-
-
1.3
ENST00000295754
3
ENSE00001716006
chr3:
30686239-30686407
169
TGFR2_HUMAN
32-88
57
1
A:15-65
51
1.4
ENST00000295754
4
ENSE00001629075
chr3:
30691762-30691952
191
TGFR2_HUMAN
88-152
65
1
A:65-129
65
1.6b
ENST00000295754
6b
ENSE00002174563
chr3:
30713130-30713929
800
TGFR2_HUMAN
152-418
267
1
A:129-136
8
1.7
ENST00000295754
7
ENSE00001734611
chr3:
30715597-30715738
142
TGFR2_HUMAN
419-466
48
0
-
-
1.8
ENST00000295754
8
ENSE00001659270
chr3:
30729876-30730003
128
TGFR2_HUMAN
466-508
43
0
-
-
1.9b
ENST00000295754
9b
ENSE00001848750
chr3:
30732912-30735626
2715
TGFR2_HUMAN
509-567
59
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ploa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Snake toxin-like
(152)
Superfamily
:
Snake toxin-like
(152)
Family
:
Extracellular domain of cell surface receptors
(39)
Protein domain
:
TGF-beta type II receptor extracellular domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1ploa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ploA00 (A:15-136)
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)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
CD59
(129)
Homologous Superfamily
:
CD59
(129)
Human (Homo sapiens)
(26)
1a
1ploA00
A:15-136
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ecTbetaR2_1ploA01 (A:24-136)
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)
Clan
:
no clan defined [family: ecTbetaR2]
(6)
Family
:
ecTbetaR2
(6)
Homo sapiens (Human)
(5)
1a
ecTbetaR2-1ploA01
A:24-136
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Chain A
Asymmetric Unit 1
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